Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0567 ATGGAGTCCGGCCGTCTTTTCTTCGGTTCCTCCTCTTGCCGCGGGAACATGCTATGTCTCGGGAATGGTGATCAGGTTTATAGAGGAGGATCGATAATAAGCATGGAGGACAGCTCAAAGAAGCGACCATTTTTCAGCTCGCCGGAGGAACTGTTCGATGAGGAATATTACGATGAGCAGTTGCCGGAGAAGAAGCGACGCCTCACTCCCGAGCAGGTGCTTCTGCTGGAGAAAAACTTTGAAGAAGAGAACAAGCTGGAGCCGGAACGGAAGACCGAGCTGGCCAAGAAGCTGGGGTTACAGCCAAGGCAGGTGGCTGTGTGGTTCCAGAACCGTAGGGCCCGTTGGAAAACCAAGCAACTTGAAAGGGATTACGATATTCTCAAGTCTTCCTACGATGCTCTCCTATCAAAGTACGACTCCATTGTCGAGGACAATGAAAAGCTCAAATCAGAGGTGGTAGCCTTGAACGAGAAGCTTCTAGCAAAAGAGATGCCAGGAGAAGCATTACCAGAAGAAAAAGCAGAGCCACTCATAATGGAGCTAGCCCAAATATCAACCCTGCCTTTCAGCGTGAAGTTGGAGGACCGACTCAGCAGTGGGAGTGGTGGAAGTGCAGTGGTGGATGAGGATGCTCCTCAGCTTGTTGTGGACAGCGTTGATTCCTACTTTTCAGTTGAAAACTTTGAAGGATGCATGGCCAGAGTCGATATGGTTCAGTCGTCGTCGTCGGATGGTAGTGACGATGGTGGGAGTTACTTCTCTGATGTTTTTGTGGCCCCTGAACCTGAGCACCAAAACCATGAGGAGGGAGAGGCGTTGTATTGGTGGGCGTGGTCTTAA 843 0.5053 MESGRLFFGSSSCRGNMLCLGNGDQVYRGGSIISMEDSSKKRPFFSSPEELFDEEYYDEQLPEKKRRLTPEQVLLLEKNFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDILKSSYDALLSKYDSIVEDNEKLKSEVVALNEKLLAKEMPGEALPEEKAEPLIMELAQISTLPFSVKLEDRLSSGSGGSAVVDEDAPQLVVDSVDSYFSVENFEGCMARVDMVQSSSSDGSDDGGSYFSDVFVAPEPEHQNHEEGEALYWWAWS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0567 280 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Alju01g0567 280 CDD homeodomain 64 120 IPR001356 GO:0003677
Alju01g0567 280 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Alju01g0567 280 SUPERFAMILY Homeodomain-like 57 121 IPR009057 -
Alju01g0567 280 Gene3D - 58 125 - -
Alju01g0567 280 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Alju01g0567 280 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Alju01g0567 280 SMART HOX_1 62 123 IPR001356 GO:0003677
Alju01g0567 280 FunFam Homeobox-leucine zipper protein HAT5 57 121 - -
Alju01g0567 280 Coils Coil 132 159 - -
Alju01g0567 280 Pfam Homeobox associated leucine zipper 119 160 IPR003106 GO:0006355|GO:0043565
Alju01g0567 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 219 IPR045224 GO:0003700
Alju01g0567 280 Pfam Homeodomain 64 117 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0567 Alju-ChrAlju01 4217035 4219137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0567 1 279 Homeobox Transcription Factor Family AT3G01470 58.099 1.01e-97 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju01g0567 Homeodomain 5.5e-18 CL0123