Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0557 ATGGATGATATAGAGGTTGAGAAGCGAATAACCAAAGCATCAGCTAGTGGTTGCAAAGGCTTTTGGAAGTGGCAAACAGTCCTCAGCTATTTAATCAATCTCAAAAAGCCTGCGTCTTCTTCTTCTTCTTCTTCTGGAACCTGGGACCTCTTGAAAGTTGTTGCGTTTTCGTTTTTCAAATTCCAGTTCCATGAGGTTTTGAGAAAGCGCAGCTGTGGTGGCCTACCCAGAAACATAGAAAGCATGTATCACAAGTGGTTTTTTAACCATACCCACTTGAAGATATCTTGGATTCATCACCAAATCCAGCAAAAAGATGGTTCCTTGAGCTACCCACCTCCTGTTTTGCCTTCATCTTCCCCCCCATATCCCGGTGCTTTCCACAAAGAAACAGGATCTTCTTCCTTGTCTGGTACCAGAATTAGTCCTGCTCTTCTTTTCATTATAGTGATTCTAGCTGTGCTCTTTTTCATTTCTGGTCTTCTACACCTGCTTGTCAGATTTCTCATAAAGCACCCATCTTCCTCAGCATCTGAATCTAATAGACACCAAGAAATCTCTACCTCCGATGCTCTTCAAAGACAACTCCAACAACTCTTCAATCTTCACGACTCTGGTCTGGATCAAGCTTTCATTGACGCACTTCCTGTTTTCCAGTATAAAGAGATAGTTGGTCTGAAAGAGCCATTTGACTGTGCTGTGTGCCTTTGTGAGTTCTCTGAGAAGGACAAGCTCAGATTGCTTCCAATGTGCAGCCATGCCTTCCATATTAATTGTATAGACACATGGCTTCTATCCAATTCGACATGTCCACTTTGTAGAGGAACCCTTTTGACTCCTGGGTTCTCAATTGAAAACCCCATATATGATTTTGATGATTTAAGGGAAGAGGATGGTTGTAACGGTGAAAATGGGTTCCCAACTTTTAGACAAAAAACTGTTGAAATTGAAGAAACTGTAGAGAAAGGAGTGTTCCCTGTAAAACTTGGTAAATTCAGAAGGCTGAATGTGGAGGCAGGGGAGAGTGGAGGAGGAGTAGGAGAGACGAGTAGCAGTAATTTAGATGCAAGAAGATGTTACTCAATGGGATCTTACCAGTATGTGTTAGCCAATTCAGACCTCCGAATTGCATTGAACCATGACCATCAAGGCCACGAGGTAAGGCTTACAAAAGGACCAGAACAATCTGAGAAGCTTTCCATGGAGGAAGCCAAGAAGATCAGAAGTGTGAGCAAAGGTGAGAGCTATTCTGTCTCCAAGATCTGGCAGTGGTCCAAGAAGAGCAAGTTTTCTACTTCGTCTGAAGAAGATCAAGCGGGCATGCCGTCTTCTCTTAAAACAGACCTTCCATGGATGAGAAAAACGGAAGGGACATGA 1377 0.4299 MDDIEVEKRITKASASGCKGFWKWQTVLSYLINLKKPASSSSSSSGTWDLLKVVAFSFFKFQFHEVLRKRSCGGLPRNIESMYHKWFFNHTHLKISWIHHQIQQKDGSLSYPPPVLPSSSPPYPGAFHKETGSSSLSGTRISPALLFIIVILAVLFFISGLLHLLVRFLIKHPSSSASESNRHQEISTSDALQRQLQQLFNLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRGTLLTPGFSIENPIYDFDDLREEDGCNGENGFPTFRQKTVEIEETVEKGVFPVKLGKFRRLNVEAGESGGGVGETSSSNLDARRCYSMGSYQYVLANSDLRIALNHDHQGHEVRLTKGPEQSEKLSMEEAKKIRSVSKGESYSVSKIWQWSKKSKFSTSSEEDQAGMPSSLKTDLPWMRKTEGT 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0557 458 SUPERFAMILY RING/U-box 211 280 - -
Alju01g0557 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 279 IPR013083 -
Alju01g0557 458 CDD RING-H2_EL5-like 231 274 - -
Alju01g0557 458 FunFam RING-H2 finger protein ATL46 194 279 - -
Alju01g0557 458 SMART ring_2 232 273 IPR001841 -
Alju01g0557 458 MobiDBLite consensus disorder prediction 426 441 - -
Alju01g0557 458 MobiDBLite consensus disorder prediction 426 458 - -
Alju01g0557 458 Pfam Ring finger domain 231 274 IPR001841 -
Alju01g0557 458 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 137 422 - -
Alju01g0557 458 ProSiteProfiles Zinc finger RING-type profile. 232 274 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0557 Alju-ChrAlju01 4158159 4161926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0557 160 437 C3H Transcription Factor Family AT2G18650 40.432 6.05e-60 200