Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0539 ATGGGCAAAAACATGGAGTTTCAGGACGCTGTTAATTTCGTGGTCCACGGATCGTTACAGAAAAATCGAGTTTCTCATAAAGCAACAGAAGCAGACGCCGGCACTCTCGGCAGGAAATGGAAGATCTTCTACCGGTCATCGTCGACCGTCGCTTCCAAGAAACAGCCCCCGGAAGAATTTCTGTGCCCCATATTAGGGTCTCTCATGGCAGACCCTGTCATCGTCTCCTCAGGTCACACCTTCGAGCGTGTCTCTGTTCAAGCTTGTAAAACTTTAAACTTCACACCACGCCTCTCCGATGGCTCCACGCCCGATTTTTCTAACGTAATTCCCAACCTGGCCCTTAAATCTGCCATTGGTAAATGGTGCCACAACTCCGCCAACCGACTCCCCGAGCCGCCTGATGTAGCTTCTTCTGAGAAGTTCGTGCTTAATCTAATGACGAAGAACCAGAAGACAGATTCAAGTATCCAGAACAAAACAGAGTCGCAGAAGGAAATAATCACAGAGGAAGAGCTGATTCAAGGGATGAAGGAGAACCCACCTGTGAATTTCAATCACGCAGCGACCGAGGTCAATCGACGGCCAGCTCATCCTTACTGGAACTCACAGGAATCGGCGGGTTCCTCTCCTGCATCTCCGCCTATGCAACTTTCAACTCGACCAAGCTGCTATTCCTCTGCTTCATCCTCAGAAATCGAAGTCATTATTCATTGCTCACCTGAAGAAGAGAACATCTTAGCCAAGTTAAGAAGCTCACAAGTGTCTGAGATCGAAGAAGCCGCTATTTCACTAAGAAAGCTCACGAAGACTAGAGAGGATACGAGGGCCCAAATCTGCAGTCCTCGGTTACTCTCTGTCCTTCGATCGTTGATCGTGTCCAAGTACACTAATATTCAGGTGAACGCGGTCGCAGCTCTGGTGAATCTCTCATTGGAGAAAGTGAGCAAAGTAAAGATACTCCGCTCCGGAATCGTTCCTCCGTTGATTGACGTATTGAAAGGAGGATCCCCTGAGGTGCAGGAACACGCTTCCGGCGCAATCTTCAGCTTGGCCATTCACGACGATAACAAGACTGCGATCGGCGTGCTGGGTGCTCTGCCGCCGCTGCTCCACTTGCTCCAATCCGAGAATGAGCGAACGCGGAATGACTCGGCGCTCGCACTGTACCACCTCTCCCTCGTACAGAGCAACCGGACCAAGATGATAAAACTCGGGTCGGTTCCGACCCTGATGAGCATGTTAAAGTCGGGTAAAATGAGGGGTCACGTACTACTCATACTATGCAACTTGGCGTCTTGTGGCGATGGTCGGGCGGCGATGTTGGATGCGCAGGCCGTGGAGTGCTTGGTGGGGCTGCTAAGTGGCAGCGAATTGGGTTCCGGGTCGACCCGGGAGAGCTGCGTGGCGGTGTTATATGCACTGAGTCACGGCGGGTTGAGGTTTAAAGCGGTGGCGAGGACGGCGGGGGTGGTGGAGGTGTTGAAGAAGGAGGAGAAGGCGGGAAGCGAGAGGGCGAGGGAGAAGGTGAAGAGGTTATTGGATATGATGAGGGTGAAGGAGGAAGCCGAAGAAGACGACGTCGACTGGGAGGCGCTTCTTGACTCGGGGCTGAGTAGTCTGAGTCACTTGCCCGAGTTATGA 1644 0.5231 MGKNMEFQDAVNFVVHGSLQKNRVSHKATEADAGTLGRKWKIFYRSSSTVASKKQPPEEFLCPILGSLMADPVIVSSGHTFERVSVQACKTLNFTPRLSDGSTPDFSNVIPNLALKSAIGKWCHNSANRLPEPPDVASSEKFVLNLMTKNQKTDSSIQNKTESQKEIITEEELIQGMKENPPVNFNHAATEVNRRPAHPYWNSQESAGSSPASPPMQLSTRPSCYSSASSSEIEVIIHCSPEEENILAKLRSSQVSEIEEAAISLRKLTKTREDTRAQICSPRLLSVLRSLIVSKYTNIQVNAVAALVNLSLEKVSKVKILRSGIVPPLIDVLKGGSPEVQEHASGAIFSLAIHDDNKTAIGVLGALPPLLHLLQSENERTRNDSALALYHLSLVQSNRTKMIKLGSVPTLMSMLKSGKMRGHVLLILCNLASCGDGRAAMLDAQAVECLVGLLSGSELGSGSTRESCVAVLYALSHGGLRFKAVARTAGVVEVLKKEEKAGSERAREKVKRLLDMMRVKEEAEEDDVDWEALLDSGLSSLSHLPEL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0539 547 Coils Coil 258 278 - -
Alju01g0539 547 SMART arm_5 272 312 IPR000225 GO:0005515
Alju01g0539 547 SMART arm_5 395 433 IPR000225 GO:0005515
Alju01g0539 547 SMART arm_5 313 353 IPR000225 GO:0005515
Alju01g0539 547 SMART arm_5 354 394 IPR000225 GO:0005515
Alju01g0539 547 SMART arm_5 434 477 IPR000225 GO:0005515
Alju01g0539 547 Pfam Kinesin-associated protein (KAP) 293 441 - -
Alju01g0539 547 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 361 IPR000225 GO:0005515
Alju01g0539 547 Coils Coil 503 523 - -
Alju01g0539 547 FunFam RING-type E3 ubiquitin transferase 241 517 - -
Alju01g0539 547 MobiDBLite consensus disorder prediction 199 224 - -
Alju01g0539 547 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842|GO:0016567
Alju01g0539 547 Pfam U-box domain 57 125 IPR003613 GO:0004842|GO:0016567
Alju01g0539 547 Gene3D - 242 519 IPR011989 -
Alju01g0539 547 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 365 407 IPR000225 GO:0005515
Alju01g0539 547 SMART Ubox_2 59 122 IPR003613 GO:0004842|GO:0016567
Alju01g0539 547 SUPERFAMILY RING/U-box 51 130 - -
Alju01g0539 547 PANTHER U BOX DOMAIN-CONTAINING 40 518 - -
Alju01g0539 547 SUPERFAMILY ARM repeat 244 515 IPR016024 -
Alju01g0539 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 132 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0539 Alju-ChrAlju01 4068575 4070218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0539 52 537 U-box Gene Family AT5G40140 55.691 1.24e-180 518