Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0517 ATGAAGTTCTGCAAGACGTACCAGGAGTACATGCAAGGGCAGGAGAAGAAACTGCCTGGGGTTGGCTTCAAGAAGCTCAAGAAGATCTTGAAGAAATGCAGAGTAGACTATCAACCCCTGCAGAATCAAAATGCCCTCGTCGACAAAGCCCACGCCCCCACCGTCCGATCATGTCCTGATCAATGCCCAGTGTGCGATGGGACTTTCTTCCCTTCACTTCTCAATGAAATGTCAGAAATAGTAGGCTGCTTTAATCAGCGAGCGCAGAAATTATCAGACCTACATCTTGCTTCTGGCTTCAGAAAGTACTTGTTTTGGATCAAAGGCAAATTGCGAGGAAACCACACCGCTCTCATTCAAGAAGGCAGAGATCTGGTTACCTATGCGCTGATCAATGCCGTTGCCATTCGAAAAATACTCAAGAAGTATGACAAGGTTCATTATTCGAAGCAAGGCCAGTTGTTCAAGTCTCAAGTTCAGAGTATGCATATGGAAGTTCTTCAGAGTCCTTGGTTTTGTGAGATGATGGCCTTGCACATCAATTTAAGGGAAACCAAGCCTCAATCCAGGAACGCAGCTGTTTTGTTTGATGGATGTTCTCTTACATTCAAGGATGGAAAACCATCAATCACTTGTCAGCTCTTTGATTCAATCAAGCTAGATATCGACTTGACTTGTTCTATATGCTTGGACACAGTATTTGATCCAGTTTCTCTTACTTGTGGCCACCTATTCTGCTACATGTGTGCTTGCTCAGCTGCATCAGTCACTATTGTTGATGGACTAAAGGAAGCAAATCCTAAAGCAAAATGTCCCCTCTGCCGAGAGAGTGGAGTTTATGAAGGTGCTATCCACCTGGAAGAATTGAACATTCTGTTAGGGCGAAGGTGCCAAGAATACTGGGAAGAAAGACTTCAGGCGGAGAGGACAGAGAGGCTTAAGCAGATAAAGGAGCATTGGCAATCAGAGTGTAGGGCTGTATTGGGCGTCTGA 993 0.4502 MKFCKTYQEYMQGQEKKLPGVGFKKLKKILKKCRVDYQPLQNQNALVDKAHAPTVRSCPDQCPVCDGTFFPSLLNEMSEIVGCFNQRAQKLSDLHLASGFRKYLFWIKGKLRGNHTALIQEGRDLVTYALINAVAIRKILKKYDKVHYSKQGQLFKSQVQSMHMEVLQSPWFCEMMALHINLRETKPQSRNAAVLFDGCSLTFKDGKPSITCQLFDSIKLDIDLTCSICLDTVFDPVSLTCGHLFCYMCACSAASVTIVDGLKEANPKAKCPLCRESGVYEGAIHLEELNILLGRRCQEYWEERLQAERTERLKQIKEHWQSECRAVLGV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0517 330 CDD SPX_BAH1-like 2 153 - -
Alju01g0517 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 328 IPR013083 -
Alju01g0517 330 ProSiteProfiles SPX domain profile. 1 157 IPR004331 -
Alju01g0517 330 ProSitePatterns Zinc finger RING-type signature. 241 250 IPR017907 -
Alju01g0517 330 SMART ring_2 226 274 IPR001841 -
Alju01g0517 330 SUPERFAMILY RING/U-box 219 278 - -
Alju01g0517 330 CDD RING-HC_BAH1-like 216 289 - -
Alju01g0517 330 ProSiteProfiles Zinc finger RING-type profile. 226 275 IPR001841 -
Alju01g0517 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 329 IPR033326 -
Alju01g0517 330 Pfam Zinc finger, C3HC4 type (RING finger) 223 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0517 Alju-ChrAlju01 3885760 3887819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0517 223 284 C3H Transcription Factor Family AT4G28270 41.791 2.22e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0517 01 3885760 3887819 Alju01g0517 01 3885760 3887819 ECH