Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0510 ATGCTAGGTGGAAAAATGAGTAGACGGGCGAGCAGGACTGTCTACGTTGGGAATTTACCGGGTGATATTCGTGAAAGAGAAGTGGAAGATCTGTTTGTCAAGTACGGACACATAACTCACATTGACTTGAAGGTTCCACCCAGACCCCCTGGGTATGCATTTGTAGAGTTCGAGGATTCTCAAGACGCTGAAGATGCAATTCGTGGTCGTGATGGCTATGATTTTGATGGTCATCGGTTACGGGTAGAGCCCGCACATGGTGGACGTGGTCATTCTTCATCCAGAGATCGATATAGTAGTCACAGTAATGGTCGAGGTGGACGTGGGGTTTCTAGGCGCTCTGAATACCGTGTACTGGTCACTGGGTTGCCCTCTTCTGCTTCCTGGCAGGATCTTAAAGATCACATGAGGAAAGCAGGAGATGTTTGTTTTTCTCAAGTTTTTCATGATGGTAGAGGAACGACTGGGATTGTTGATTACACAAACTATGATGACATGAAATACGCTATCAAGAAGCTTGATGACTCTGAGTTTCGGAATGCATTTTCCAGAGCTTATGTTCGGGTGAGGGAACATGATTCAAAGCGGGACTCCTCTAGAAGCCCTAGTCGTGGCCGATCTTATTCTAGGGGGAGAAGTTATAGCCGCAGCCGCAGTTACAGCCGAGGGCGTAGTCTGAGCAAATCTCCAAAGGGTAAATCTTCTCAGCGTTCACCTGCTAAATCTCCTTCAAGATCTGTTTCACGCTCACGTTCTCGCTCGAAGTCAAGGTCCCGCTCTTTGTCAGGATATGGATACTTGGAGCAAACTGGGAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTGCCTGCAACTCAATTTGTTGTGGAGATTGGGAATCAAGGAGATCATGGATTGCAATTTTAG 912 0.466 MLGGKMSRRASRTVYVGNLPGDIREREVEDLFVKYGHITHIDLKVPPRPPGYAFVEFEDSQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAYVRVREHDSKRDSSRSPSRGRSYSRGRSYSRSRSYSRGRSLSKSPKGKSSQRSPAKSPSRSVSRSRSRSKSRSRSLSGYGYLEQTGNWKLGTWWDLVQLPATQFVVEIGNQGDHGLQF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0510 303 SMART rrm1_1 117 188 IPR000504 GO:0003723
Alju01g0510 303 SMART rrm1_1 13 83 IPR000504 GO:0003723
Alju01g0510 303 Gene3D - 4 114 IPR012677 -
Alju01g0510 303 MobiDBLite consensus disorder prediction 78 112 - -
Alju01g0510 303 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 6 115 - -
Alju01g0510 303 Gene3D - 115 193 IPR012677 -
Alju01g0510 303 SUPERFAMILY RNA-binding domain, RBD 11 184 IPR035979 GO:0003676
Alju01g0510 303 CDD RRM1_SF2_plant_like 13 83 - -
Alju01g0510 303 MobiDBLite consensus disorder prediction 204 247 - -
Alju01g0510 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 81 IPR000504 GO:0003723
Alju01g0510 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 180 IPR000504 GO:0003723
Alju01g0510 303 CDD RRM2_SF2_plant_like 116 191 - -
Alju01g0510 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 87 IPR000504 GO:0003723
Alju01g0510 303 MobiDBLite consensus disorder prediction 190 261 - -
Alju01g0510 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Alju01g0510 303 FunFam serine/arginine-rich splicing factor SR34A-like 116 193 - -
Alju01g0510 303 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 4 259 - -
Alju01g0510 303 MobiDBLite consensus disorder prediction 78 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0510 Alju-ChrAlju01 3802374 3806083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0510 3 200 Eukaryotic Initiation Factors Gene Family AT4G34110 24.638 5.01e-07 49.3