Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0476 ATGTCTGATGTGGCACTTCAGCTGCAACAGGGAGGGGAGGGTGAGAGGAGAATGGTGTCACTGAAACTTCAGAAGCGGCTCGCCGCTAGTGTCCTCAAGTGCGGCAGGGGCAAAGTTTGGCTTGACCCAAATGAAGCCAACGAAATATCCATGGCCAATTCTCGCCAAAACATTAGGAAGTTGGTGAAGGATGGTTTCATCATCCGGAAGCCAACCAAGATTCACTCCCGTTCACGTGCCCGTCGAATGAAGGAGGCCAAGAGGAAGGGACGTCACTCTGGATATGGTAAGCGAAAGGGTACCAGAGAGGCACGACTTCCTACAAAGATTCTTTGGATGAGAAGAATGCGTGTGCTCAGACGCTTACTCCGCAAGTACAGGGAATCAAAGAAAATTGACAAGCATATGTACCATGATATGTACATGAAAGTTAAGGGCAATGTGTTCAAGAATAAGAGAGTCCTAATGGAGAGCATTCACAAATCCAAGGCTGAGAAGGCAAGAGAGAAGACTTTGAGTGATCAGTTTGAGGCTAAGCGTGCAAAGAACAAGGCAAGCCGTGAAAGGAAAATCGCAAGGAGGGAGGAGCGATTTGCTCATGGTCCTGGAGAAAAACCTGCTGCAGCACCTACCACACAACCTGCTACAGCATCTCAGGCAGCCCCAGGATCAAAAAAATCCAAGAAGTGA 690 0.4855 MSDVALQLQQGGEGERRMVSLKLQKRLAASVLKCGRGKVWLDPNEANEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERFAHGPGEKPAAAPTTQPATASQAAPGSKKSKK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0476 229 CDD Ribosomal_L19e_E 21 184 IPR033935 GO:0003735|GO:0022625
Alju01g0476 229 ProSitePatterns Ribosomal protein L19e signature. 24 43 IPR023638 -
Alju01g0476 229 FunFam Ribosomal protein L19 74 208 - -
Alju01g0476 229 MobiDBLite consensus disorder prediction 74 96 - -
Alju01g0476 229 MobiDBLite consensus disorder prediction 161 202 - -
Alju01g0476 229 MobiDBLite consensus disorder prediction 161 229 - -
Alju01g0476 229 Gene3D - 74 204 - -
Alju01g0476 229 SMART Ribosomal_L19e_2 20 163 IPR000196 GO:0003735|GO:0005840|GO:0006412
Alju01g0476 229 PANTHER 60S RIBOSOMAL PROTEIN L19 18 205 IPR039547 GO:0003723|GO:0003735|GO:0022625
Alju01g0476 229 MobiDBLite consensus disorder prediction 211 229 - -
Alju01g0476 229 FunFam Ribosomal protein L19 18 73 - -
Alju01g0476 229 SUPERFAMILY Ribosomal protein L19 (L19e) 20 161 IPR035970 GO:0003735|GO:0005840|GO:0006412
Alju01g0476 229 Gene3D - 19 73 IPR015972 GO:0003735|GO:0005840|GO:0006412
Alju01g0476 229 MobiDBLite consensus disorder prediction 74 102 - -
Alju01g0476 229 Hamap 50S ribosomal protein L19e [rpl19e]. 20 166 IPR000196 GO:0003735|GO:0005840|GO:0006412
Alju01g0476 229 Pfam Ribosomal protein L19e 21 162 IPR000196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0476 Alju-ChrAlju01 3578210 3582641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0476 18 229 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.491 2.09e-125 352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0476 01 3578210 3582641 Alju01g0476 01 3578210 3582641 ECH