Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0462 ATGGCCAAAGCCAATGCCAAGGAGAAATCCGCTTCCGCTCCTCACCATCCTCCCTATTTCCATATGATATCGGAAGCCATTTCCGCATTGAACGACCGCACGGGTTCCAGTCAGCAAGCAGTTGCCAAGTTCATCGAGGACAAACACAAGTCACTTCTGCCCCCAAATTTCAGGACACGGCTCTCTGTTCAACTCAAGAAGTTTGTCAAGTCGGAGAGGCTCTTCAAGGTGAAGAATTCCTTCAAGATCTCCCCCTCGGAGAAGAACAATGCTGCCAAACCACGTAAGAAGGGTGCGACGCCTGCGCAGAAGGCTGCCAAGAAGATGGCAGACAAGGGGCTGAAGACCAAGAGGCTGAGTCACGTGAAGACGCCGGAGGCACTCAAGAAGGCCCACAAGGATACGAAGAAGAAGTCGATAGTCCCCTCGGCTGGGAAAGACCGAAAAGTGAAGCGTCTGAGTCTGGTTAAAACTCCCAACGCAATGAAGAAGAAGAAGACCAAAGTTACCCCTATGGAGAGGAAGGCTACTTCCATAACCGTCAAGCCTTCTAGGCCCGCGAAGAAAGTTGTTGCATCTGCTTCCTTTATTGTCCTGTTATCACATTCCGCGAACAGAAAAAAGAGGAGGAGGAGGAGGAGAAGAGGGCATGGAAGGCATTTCGGTGAGCATGTTGAAGGGATTAATGGAGTACTGGAACAGAAGAGGATACCGGAGATTAAATGGGTCGGGTCGCCGGAGGAGGATCTGCAGGGCGCAGCTGGGGAGCAGCAGCCGGATGAGGCGGTTCTGGAGGATCAAAATGGCCCCAAAGATCCGATTGACGAGGATTCCGTCGCCAAAGAAGGTGCTGGTGTGGCTGAGGGACGCCTACGTGAGAATGATGATGAGAGTGGCGAACTCGCGGGCCATGAGCAGCATGAACTCCGGTGGGGCGGTGATGGGGTTCGGCGGAGGCACGGCGGCCTTCGGCTTCGGGAGGGGACCCGTGAAGGAGTACGACGAGAAGATGATCATTCAGATGTACAAGTCGTTGATGTTGAGGCAAGCACACTTGGTTCCCGGCGACGTCCCCAGGATCTCCCCTGTTATCGCCGCTTGCCCTCCCAAAACTTGAGACACCCTAGCTCACTGCTTTCAGCTTTTTGGGCTATATATGATGATTATGACGGTGGTGCATAG 1182 0.5347 MAKANAKEKSASAPHHPPYFHMISEAISALNDRTGSSQQAVAKFIEDKHKSLLPPNFRTRLSVQLKKFVKSERLFKVKNSFKISPSEKNNAAKPRKKGATPAQKAAKKMADKGLKTKRLSHVKTPEALKKAHKDTKKKSIVPSAGKDRKVKRLSLVKTPNAMKKKKTKVTPMERKATSITVKPSRPAKKVVASASFIVLLSHSANRKKRRRRRRRGHGRHFGEHVEGINGVLEQKRIPEIKWVGSPEEDLQGAAGEQQPDEAVLEDQNGPKDPIDEDSVAKEGAGVAEGRLRENDDESGELAGHEQHELRWGGDGVRRRHGGLRLREGTREGVRREDDHSDVQVVDVEASTLGSRRRPQDLPCYRRLPSQNLRHPSSLLSAFWAIYDDYDGGA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0462 393 CDD H15 13 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju01g0462 393 MobiDBLite consensus disorder prediction 204 219 - -
Alju01g0462 393 SUPERFAMILY "Winged helix" DNA-binding domain 13 97 IPR036390 -
Alju01g0462 393 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju01g0462 393 Gene3D - 11 98 IPR036388 -
Alju01g0462 393 PRINTS Histone H5 signature 142 159 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju01g0462 393 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju01g0462 393 PRINTS Histone H5 signature 164 183 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju01g0462 393 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju01g0462 393 Pfam linker histone H1 and H5 family 16 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju01g0462 393 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju01g0462 393 MobiDBLite consensus disorder prediction 247 361 - -
Alju01g0462 393 PANTHER HISTONE H1 5 257 - -
Alju01g0462 393 MobiDBLite consensus disorder prediction 204 225 - -
Alju01g0462 393 MobiDBLite consensus disorder prediction 265 344 - -
Alju01g0462 393 MobiDBLite consensus disorder prediction 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0462 Alju-ChrAlju01 3479722 3485427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0462 17 83 Single Myb Histone (SMH) Gene Family AT1G72740 41.791 5.54e-09 55.1