Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0443 ATGGAAGAAGTAGTTTTATTGGTCGATGATTTGAAATTACTTTCCGCGACTCGTCGCTGCAGAATATGTCACGATGAAGAATTTGAGAGCTCCCAAAGCCTTGAAGCTCCTTGTGCTTGTTCTGGCACCGTTAAGTTTGCTCACAGAGATTGCATACAGACATGGTGCAACGAGAAAGGAAACACAACCTGTGAATTATGTCTTCAGCAATATGAACCTGGATATACAGCAGTCCCAAAGAAATCTCAGATAAATGACGTGGCTATGACAATCAGAGATAGCCTGCAAATTCCAAGGGATGAAGAACCCTTAAGCGCGAGATCAGAGGGAAGTGAAGAAGGAGTGACTACAACAGAAGGAGATTACTCTGAGTGCACCTCTACTGCGGATAGAAGTGCTTCTTGCTGCCGATCACTGGCTTTATTTTTTACACTCGTTCTGCTTGTGAGACATCTTTTCGTGGTGCTCACGAGCGCAAAGGAAGATTACCCATTTTCACTTTTAACGGTGTTTATACTAAAAGCAAGCGGCATAATTCTACCCATGTACATAATAATGCGGGCCATAGGAGGCATATTTGGAAGTATTCAACGTCACTACCAGGATTCTGACGACGACACATCAATGTCCGACAGTGAAGATGAAGATAGTGAACTGATTCATGATACCATTGTTCCACATCAATAA 687 0.4279 MEEVVLLVDDLKLLSATRRCRICHDEEFESSQSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCELCLQQYEPGYTAVPKKSQINDVAMTIRDSLQIPRDEEPLSARSEGSEEGVTTTEGDYSECTSTADRSASCCRSLALFFTLVLLVRHLFVVLTSAKEDYPFSLLTVFILKASGIILPMYIIMRAIGGIFGSIQRHYQDSDDDTSMSDSEDEDSELIHDTIVPHQ 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0443 228 SMART ringv_2 19 68 IPR011016 GO:0008270
Alju01g0443 228 CDD RING_CH-C4HC3_MARCH 20 67 - -
Alju01g0443 228 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 17 197 IPR033275 -
Alju01g0443 228 MobiDBLite consensus disorder prediction 203 228 - -
Alju01g0443 228 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Alju01g0443 228 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Alju01g0443 228 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Alju01g0443 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 77 IPR013083 -
Alju01g0443 228 MobiDBLite consensus disorder prediction 101 123 - -
Alju01g0443 228 SUPERFAMILY RING/U-box 17 72 - -
Alju01g0443 228 Pfam Protein of unknown function (DUF3675) 73 189 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0443 Alju-ChrAlju01 3361293 3363608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0443 9 67 C3H Transcription Factor Family AT2G37950 38.333 1.40e-07 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0443 01 3361293 3363608 Alju03g3047 03 55404671 55406597 CCT
Alju01g0443 01 3361293 3363608 Alju01g0443 01 3361293 3363608 ECH