Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0430 ATGTCGAAACGGAAGTTCGGCTTCGAAGGCTTTGGCATCAACCGCCAATCGACCTATAATTTTGAGAGATCTCAACCTCCTCAGCGACTGTATGTTCCTCCTTCATCACGTCACGGGCATGACAATTACGAAGATACCGACCTTGACAACATCGAATATGACGATAATGATGCTCCCAAAGACGGAAACGATGGCAACAGCGACGATATTGATCCCCTTGATGCTTTCATGGAAGGGATTCACGAGGAAATGAAAGCCGCGCCACCTCCGCAGCCGAAAGAGAAGGCAGAGGACAGGTATAGAGATGATGACGAGGACGACCCGATGGAGAGCTTCTTGATGGCGAAGAAGGACGTAGGGTTGACCTTGGCATCTGAGGCTCTGCACGCTGGGTATGACTCCGATGAAGAGGTTTATGCAGCTGCAAAAGCTGTAGACGCGGGAATGATAGAGTATGACTCTGATGACAACCCTCTTCTTGCTGACAAGAAGAAAATTGAGCCTATTCCTGCTTTGGACCACAGTTCCATTGAGTACGAGCCCCTTAACAAGGATTTTTACGAGGAGAAACCTTCAATATCAGGTATGAGTGAGCAAGATGTTGCTGAATACAGGAAGAGTTTGGCCATTCGTATATCAGGTTTTGATGTTCCAAAGCCAATTAAGACGTTTGAAGACTGTGGTTTCTCTCCACAACTCATGAATGCCATAAAGAAGCAAGGCTATGAGAAACCAACGTCAATACAATGCCAAGCTTTACCAGTTGTGCTCTCTGGCAGAGATATAATCGGTATAGCTAAAACTGGTTCTGGTAAAACTGCTGCCTTTGTCCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAAGAAGGTCCAGTAGGAGTAATTTGTGCTCCCACTAGAGAACTGGCGCATCAGATATACTTGGAGGCCAAGAAATTCGCAAAACCCTATGGGTTACGCGTCTCTGCTGTCTATGGTGGAATGTCAAAACTGGATCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCTGGAAGATTGATAGACATGCTAAAAATGAAGGCAGTTACAATGATGAGAGCAACTTACTTGGTGCTTGATGAGGCTGATAGGATGTTTGACCTTGGGTTTGAGCCACAAGTAAGGTCCATTGTCGGTCAGATCAGGCCTGATCGCCAAACTTTACTTTTTTCTGCAACAATGCCTCGTAAAGTTGAGAAGTTGGCCAGGGAAATTCTTAGTGATCCTGTTAGAGTGACTGTTGGGGAGGTTGGAATGGCAAATGAAGACATTACTCAAGTTGTTCAAGTGATTTCTTCTGATACAGAGAAAATGCCGTGGCTCCTTGAGAAGCTGCCTGGAATGATTGATGAAGGTGATGTCTTAGTATTTGCTTCCAAAAAGGCTACTGTGGATGAAATTGAATCACAACTGTCACAAAGAAGCTTTAAAGTGGCAGCTCTGCATGGCGATAAAGATCAAGCTTCTCGAATGGATATCTTGCAGAAGTTTAAATCTGGTGCCTACCATGTTCTTATTGCGACTGATGTTGCTGCCCGTGGTCTTGACATCAAATCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGACATGGATATGCATGTACATCGCATTGGCAGAACAGGTCGTGCTGGTGACAAAGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGCTTTGCTGGTGAGCTGGTTAATAGCTTAATAGCAGCTGGACAGAATGTGTCTATGGAGTTGATGGATCTTGCTATGAAGGATGGAAGATTCAGGTCCAAACGTGATGCAAGGAAAGGAGGTGGGAGAAAAGGTAAAGGGAGGGGAGGGGGTGGAGGTAGAGGTGTGCGGGGTGTGGATTATGGCTTGGGTATTGGATACACTCCGGAGTCCAATAACCCTCCACCTAGCACAACAAGTCGATCTGCCGCTGTAAACTCACTGCGGACCGGGATGATGGCACAATTTAGGAGCAACTTTGTTGCTGCTTCGTCAAACTCTCAAAACCAAAGCTTCAGTAACGGTACAAGTATGCCTGCTAATAAGAGACCTGCCCTCGCTGGCTTCGTATCTGGTGGATCAATTGGTGGCGATGTAAATAATAATCAGACTCCTGCTTCATCCAGACCAGCTACTTCGGCTGTAAATGCTAGTAGTCACAACTCTGGAGTTGATACTGATCAGAGGAATGCCGACAGGCCTAGAGAAAGGAGGAGGCCGTCAGGTTGGGACAGGTAG 2289 0.4587 MSKRKFGFEGFGINRQSTYNFERSQPPQRLYVPPSSRHGHDNYEDTDLDNIEYDDNDAPKDGNDGNSDDIDPLDAFMEGIHEEMKAAPPPQPKEKAEDRYRDDDEDDPMESFLMAKKDVGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPLLADKKKIEPIPALDHSSIEYEPLNKDFYEEKPSISGMSEQDVAEYRKSLAIRISGFDVPKPIKTFEDCGFSPQLMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPVGVICAPTRELAHQIYLEAKKFAKPYGLRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKAVTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVQVISSDTEKMPWLLEKLPGMIDEGDVLVFASKKATVDEIESQLSQRSFKVAALHGDKDQASRMDILQKFKSGAYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGRKGKGRGGGGGRGVRGVDYGLGIGYTPESNNPPPSTTSRSAAVNSLRTGMMAQFRSNFVAASSNSQNQSFSNGTSMPANKRPALAGFVSGGSIGGDVNNNQTPASSRPATSAVNASSHNSGVDTDQRNADRPRERRRPSGWDR 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0430 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 600 IPR027417 -
Alju01g0430 762 Gene3D - 184 428 IPR027417 -
Alju01g0430 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 428 IPR014001 -
Alju01g0430 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 431 IPR027417 -
Alju01g0430 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 457 602 IPR001650 -
Alju01g0430 762 Gene3D - 429 606 IPR027417 -
Alju01g0430 762 MobiDBLite consensus disorder prediction 743 762 - -
Alju01g0430 762 CDD DEADc_DDX42 233 429 - -
Alju01g0430 762 SMART ultradead3 241 443 IPR014001 -
Alju01g0430 762 Pfam Helicase conserved C-terminal domain 466 562 IPR001650 -
Alju01g0430 762 Pfam DEAD/DEAH box helicase 246 417 IPR011545 GO:0003676|GO:0005524
Alju01g0430 762 CDD SF2_C_DEAD 440 572 - -
Alju01g0430 762 MobiDBLite consensus disorder prediction 683 762 - -
Alju01g0430 762 MobiDBLite consensus disorder prediction 53 67 - -
Alju01g0430 762 MobiDBLite consensus disorder prediction 712 742 - -
Alju01g0430 762 MobiDBLite consensus disorder prediction 607 660 - -
Alju01g0430 762 MobiDBLite consensus disorder prediction 1 105 - -
Alju01g0430 762 MobiDBLite consensus disorder prediction 13 31 - -
Alju01g0430 762 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 374 382 IPR000629 -
Alju01g0430 762 FunFam probable ATP-dependent RNA helicase DDX17 184 431 - -
Alju01g0430 762 MobiDBLite consensus disorder prediction 683 697 - -
Alju01g0430 762 SMART helicmild6 481 562 IPR001650 -
Alju01g0430 762 MobiDBLite consensus disorder prediction 74 102 - -
Alju01g0430 762 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 190 602 - -
Alju01g0430 762 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0430 Alju-ChrAlju01 3261728 3266657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0430 222 578 Eukaryotic Initiation Factors Gene Family AT3G13920 35.278 2.39e-62 213
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0430 01 3261728 3266657 Alju01g0430 01 3261728 3266657 ECH