LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g0414	ATGGGCTCAAAGATGACAGGGAAGTATGTAGCAAATCAAAGTGAAGACGATATGTGCGTGAGAAAAGGTCCATGGACTGTTGAAGAGGACACCATTCTCGCCAATTACGTGGCCACTCATGGTGAAGGTCGCTGGAATTTCGTCGCTCGCTGTGCAGGTCTGAATAGAACGGGCAAAAGTTGCAGACTGAGATGGCTAAACTACTTGCGTCCCGATGTTCGGCGCGGAAATATCACACTCCAAGAACAGATATTGATTCTCGACCTCCATTCTCGCTGGGGAAATAGGTGGTCGAAAATTGCAGAGCATTTGCCAGGAAGAACAGACAACGAGATAAAAAATTATTGGAGAACCAGAGTGATCAAGCAGGCGAAGCAGCTCAAGTGTGAGGTCAACAGCAAACAGTTCAGAGACGCCCTGCGTTACGTTTGGATTCCCCGCTTGCTGGAGCGGATTCGGGCCTCGTCCGAAGATCAACCCGGTTCGGGGACAGAGCGAAGAAGACCCAGTTACTGTTGCACCCCTGTCTATGCGGGACCAGAACTACGAGTCTCTTCGAATTCAGACAGCAGCGAAACAACGGGTCATCCAATAGGAAACGGGTCGGTGACCCAGGCAGCAGAACAGGGAGACCGGCTGGAGAATCTGTGGAGCGATGAGAATATATGGTTCTTACGGCAACAACTTTGTGATGGGTTCTAA	702	0.5028	MGSKMTGKYVANQSEDDMCVRKGPWTVEEDTILANYVATHGEGRWNFVARCAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVIKQAKQLKCEVNSKQFRDALRYVWIPRLLERIRASSEDQPGSGTERRRPSYCCTPVYAGPELRVSSNSDSSETTGHPIGNGSVTQAAEQGDRLENLWSDENIWFLRQQLCDGF	233

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g0414	233	Gene3D	-	79	120	-	-
	Alju01g0414	233	SUPERFAMILY	Homeodomain-like	20	116	IPR009057	-
	Alju01g0414	233	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	17	69	IPR017930	-
	Alju01g0414	233	SMART	sant	74	122	IPR001005	-
	Alju01g0414	233	SMART	sant	21	71	IPR001005	-
	Alju01g0414	233	CDD	SANT	24	69	IPR001005	-
	Alju01g0414	233	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	70	124	IPR017930	-
	Alju01g0414	233	FunFam	MYB transcription factor	79	142	-	-
	Alju01g0414	233	FunFam	Myb transcription factor	22	74	-	-
	Alju01g0414	233	ProSiteProfiles	Myb-like domain profile.	21	69	IPR001005	-
	Alju01g0414	233	ProSiteProfiles	Myb-like domain profile.	70	120	IPR001005	-
	Alju01g0414	233	Gene3D	-	23	74	-	-
	Alju01g0414	233	CDD	SANT	79	118	IPR001005	-
	Alju01g0414	233	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	19	188	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Alju01g0414	233	Pfam	Myb-like DNA-binding domain	22	69	IPR001005	-
	Alju01g0414	233	Pfam	Myb-like DNA-binding domain	75	118	IPR001005	-
	Alju01g0414	233	MobiDBLite	consensus disorder prediction	182	205	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g0414	Alju-ChrAlju01	3126832	3127791	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g0414	15	230	MYB Transcription Factor Family	AT2G47190	52.000	6.91e-79	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Alju01g0414		Myb_DNA-binding	2.3e-17	CL0123