LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g0404	ATGGCATCAGCGGGTGTAGCACCTGCTTCTGGATTGAGAGATGTAAAGGCAAATACAGTTGGCATTGACAAGTTGCCTGATGAGATGAATGACATGAAAATTAGAGATGACAAGGAAATGGAGGCAACTGTTGTAGATGGAAATGGGACTGAAACAGGACATATAATTGTGACCACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACTATAAGCTACATGGCTGAGCGCATTGTTGGACAAGGTTCGTTTGGTGTGGTTTTCCAGGCAAAGTGCTTGGAGACTGGTGAAACAGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGATACAAGAACCGGGAATTGCAAACTATGCGTCTTCTTGACCACCCTAATGTTGTATCTTTGAAGCATTGTTTCTTTTCAACTACTGAAAAAGATGAGCTTTACCTTAACTTGGTACTTGAGTATGTTCCCGAGACTGTCCATCGGGTGATCAGACACTACAATAAAATGAATCAAAGGATGCCATTGATATATGTGAAGCTTTATTTCTACCAAATATTGAGAGCACTTGCTTACATTCACAACAGTATCGGAGTGTGTCACAGAGACATAAAGCCTCAAAATTTACTGGTCAACCCTCACACTCACCAGTTGAAGCTGTGTGACTTTGGAAGTGCTAAAGTTTTGGTGAAAGGGGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTTGGTGCAACTGAGTACAGCACAGCTATTGACATTTGGTCTGCTGGTTGTGTACTCGGTGAACTATTGCTTGGACAGCCTCTCTTCCCTGGTGAGAGTGGAGTGGACCAGCTTGTCGAAATTATAAAGGTTTTGGGCACCCCAACAAGAGAAGAAATTAAATGCATGAATCCTAATTACACAGAGTATAAATTTCCCCAAATTAAAGCCCATCCATGGCACAAGATCTTTCACAAGCGCATGCCACCTGAAGCTGTGGACCTTGTCTCAAGACTTCTGCAATACTCCCCAAATCTTCGATACACAGCTTTGGAGGGTCTTGCTCATCCATTCTTTGGTGAGCTGCGGGATCCAAACACACGCTTGCCAAATGGGCGGTTTCTTCCTCCACTATTTAACTTCAAGGCCAACGAGCTTAAGGGAGTGCCTGCAGAGATGCTGGTGAAGCTAATTCCACCGCACGCCCGAAAGCAGTGTGCCTTATTTGGGTCATCGTGA	1233	0.438	MASAGVAPASGLRDVKANTVGIDKLPDEMNDMKIRDDKEMEATVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERIVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYNKMNQRMPLIYVKLYFYQILRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYSTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEYKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRYTALEGLAHPFFGELRDPNTRLPNGRFLPPLFNFKANELKGVPAEMLVKLIPPHARKQCALFGSS	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g0404	410	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	194	206	IPR008271	GO:0004672\|GO:0006468
	Alju01g0404	410	SMART	serkin_6	73	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g0404	410	FunFam	Shaggy-related protein kinase kappa	153	401	-	-
	Alju01g0404	410	SUPERFAMILY	Protein kinase-like (PK-like)	72	382	IPR011009	-
	Alju01g0404	410	Pfam	Protein kinase domain	73	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g0404	410	ProSiteProfiles	Protein kinase domain profile.	73	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g0404	410	FunFam	Glycogen synthase kinase-3 beta	57	152	-	-
	Alju01g0404	410	CDD	STKc_GSK3	68	360	IPR039192	-
	Alju01g0404	410	ProSitePatterns	Protein kinases ATP-binding region signature.	79	103	IPR017441	GO:0005524
	Alju01g0404	410	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	37	403	-	-
	Alju01g0404	410	Gene3D	Phosphorylase Kinase; domain 1	57	152	-	-
	Alju01g0404	410	Gene3D	Transferase(Phosphotransferase) domain 1	153	401	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g0404	Alju-ChrAlju01	3068959	3071757	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g0404	79	364	MAP Kinase Gene Family	AT3G45640	34.915	3.80e-57	190

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Alju01g0404		Pkinase	5.3e-65	CL0016