Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0387 ATGGCCGGAGATGCGAGCAAGAACGACTACAATGTCATCATTCGTGCGCCGGATGCGGCCGGGGGCGGAAGAGCAGAGCTGCAATACGCCTTAGCGAAGATCTCTGTGTGGTGGGACATTGAGAACTGCCAAGTTCCAAAGGGCTGCGACACTCACGCCATCGCTCAGAATATTAGTTCCGCACTTGTCAAGATGAACTATTGTGGTCCCGTCTCCATCTCCGCCTACGGCGACACAAGTCGGATACCACCTTCCGTTCAGAAAGCACTTTCTAGCACCGGAATTTCTCTCAACCATATTCCAGCCGGTGTGAAAGATGCCAGTGATAAGAAAATTCTAGTTGATATGTTGTTATGGGCAGTAGACAACCCTGCTCCAGCAAATTATTTGCTGATTTCTGGAGACAGAGATTTCTCAAATGCTCTGCATCAGCTGCGCCTGAGAAAATACAACATTCTTCTAGCACAACCACCAAAAGCATCAGCTCCTCTAGTTGCAGCAGCAAAATGTGTATGGCTCTGGACCAGCCTTTTATCTGGTGGGGCCCCACTACCAAGTGGTGAATCATTATGCCTTGCAAGTGGTAACCATGTCTCTAATTCTGAGAAAATTCAAAACCCGGTTGCTGAGCCAAATCAAACAAGTCAGCCACTGGCTCTCAATTCTGAAAATCGTGATGTGGGCAGTCAAAAAACTCTAAATACCTATACTACTAGAAGGGTTGGTGATTTGGAACCCGAAGTAAAATACGTTTTGAAAACTGACAATCAGCCCAACCTATCAACAAGGTCTTCAAGCTTACCTGTTACAGTTTCAGGAGGTAAGCCCAATGATCCTCTTAAACTAGCACAGTCGCCCATGAAGCAGTTCCGAAAAGCTCCTCATGAATTCTTTAGTAGTGAGCCTGCAGTCCCAAATAGTAGGTTTACTCCTATCCTTCTAAGCAACCAAGATTCCTCAGAAAATAAAAGGGGCAACTCTAATGAAATTTCTCAGGATCTCTATCATAGTTCTCTGAGGTCAAACGACCTTGATATACAGCCCATGTCCGGACCCAATTCGCCTCTTCCTGATTCTCATACTCGGACATTTCAACCAGTTCCTCCTCGTTCGGATGAACCTAAATTGACTGCAGCCCCAATTTCATTTAAATTTATACCTAAGCTACAAAATTCTCCAAATTCTAGAAATGTCAAAAGTACTCTTATTTGTCATCAGCAAACCAAGGAAAACCCTAATCCAAGTACTGCTCAAAATCCTAATCTACAAAGCGTGCATGTAACCCCAGCAGGCTACAACCCATCATGTGGCCAAGCATTTCAGTATGAGAATTTGAACCAGAGGCGTCCTTTTGGTTCTCAACATTTGCTTTCTCCTTCCTTCACTGGAATTGCCAATACCAGTTCTAAGAATGTTATCTTGGGAGTTCAGGGATTTCCACCACCTTCTGAGTATGAGCAAGGCCTCGTTGGTGTTATTCTACTAGCCTTGAACACTCTGAAGGTTGAAAAGGTTCTGCCAACTGAAGCAAATATTATTGATTGCATTTCTTATGGAGATTCCAAATATCGAACTACTGATGTCAAGAAGGCCTTAGATTGTGCAATAAAGCTAAATGTGGTAGTAAAACCAAGACTAGGTGCATTAGAGTTTTATATCGGTAGATTTGAGACACTATGGAATTGTGTAAACATTATAGGTGGTACTGTTGATCAGTATCCAAAAACAACATGGGATCGGATACAAGAGTTCCTCGCTTCATCATCCGGACGATCAGCAATTTTGTCTTCCCAGTGCAGATATGAAGCATCTTTAATTCTACGGAAAGAATGCCTTACAGGGCTTGTGTTAGGAGAGGTACTTCAGATTTTGAATATGATCATCATGGTCAAGAAATGGATTACAATTCATCGGTCTGGATGGCAGCCGATTACTATTACGCTTAATAACAGGAATTTGTTTGACTAG 1968 0.4314 MAGDASKNDYNVIIRAPDAAGGGRAELQYALAKISVWWDIENCQVPKGCDTHAIAQNISSALVKMNYCGPVSISAYGDTSRIPPSVQKALSSTGISLNHIPAGVKDASDKKILVDMLLWAVDNPAPANYLLISGDRDFSNALHQLRLRKYNILLAQPPKASAPLVAAAKCVWLWTSLLSGGAPLPSGESLCLASGNHVSNSEKIQNPVAEPNQTSQPLALNSENRDVGSQKTLNTYTTRRVGDLEPEVKYVLKTDNQPNLSTRSSSLPVTVSGGKPNDPLKLAQSPMKQFRKAPHEFFSSEPAVPNSRFTPILLSNQDSSENKRGNSNEISQDLYHSSLRSNDLDIQPMSGPNSPLPDSHTRTFQPVPPRSDEPKLTAAPISFKFIPKLQNSPNSRNVKSTLICHQQTKENPNPSTAQNPNLQSVHVTPAGYNPSCGQAFQYENLNQRRPFGSQHLLSPSFTGIANTSSKNVILGVQGFPPPSEYEQGLVGVILLALNTLKVEKVLPTEANIIDCISYGDSKYRTTDVKKALDCAIKLNVVVKPRLGALEFYIGRFETLWNCVNIIGGTVDQYPKTTWDRIQEFLASSSGRSAILSSQCRYEASLILRKECLTGLVLGEVLQILNMIIMVKKWITIHRSGWQPITITLNNRNLFD 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0387 655 Pfam OST-HTH Associated domain 596 649 IPR025677 -
Alju01g0387 655 Pfam NYN domain 33 168 IPR021139 GO:0004540
Alju01g0387 655 MobiDBLite consensus disorder prediction 342 366 - -
Alju01g0387 655 MobiDBLite consensus disorder prediction 207 240 - -
Alju01g0387 655 Gene3D - 30 176 - -
Alju01g0387 655 MobiDBLite consensus disorder prediction 252 281 - -
Alju01g0387 655 MobiDBLite consensus disorder prediction 254 272 - -
Alju01g0387 655 MobiDBLite consensus disorder prediction 207 239 - -
Alju01g0387 655 PANTHER LIMKAIN B LKAP 30 529 IPR024768 GO:0005777|GO:0010468
Alju01g0387 655 MobiDBLite consensus disorder prediction 342 374 - -
Alju01g0387 655 CDD PIN_limkain_b1_N_like 33 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0387 Alju-ChrAlju01 2949146 2951784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0387 25 253 C2H2 Transcription Factor Family AT5G61190 65.368 1.18e-87 293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0387 01 2949146 2951784 Alju01g0387 01 2949146 2951784 ECH