Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0367 ATGGGTAAAGCCTCTAGCTCTTCCTCCTCCTCTATCAGCAGCAACAACCACCCACTCATTTCAACTGCTTCATCTCTCACCCGCCTCCATAACTCTGATCACCTTCCCACAGATCTCAGGCTTGGTCTTAGCATTTCAGCAACCCAACATGCTGGCTCTTCTGTTTCAAGGGGGCAACCAACAGATTGGATCCCAAACCAGCGTGGTTATGGGGCAGAAGTAAATGATTGTGGGGATCATAGCAGCATGTTTGTAAAGGTGTATATGGAAGGCATTCCAATAGGGAGGAAACTCAATCTGGTAGCTCACGAAGGCTACCATGAGTTAGTGAGGACTCTGGAAAACATGTTTGACACTACCATTCTCTGGGGGACGGGGATGGATGGGGTGCAACCAGAGAGGTGCCATGTGCTAACATACGAAGACGAAGAAGGAGATTTGGTGATGGTGGGGGATGTTCCTTGGGAAATGTTCCTATCAACGGTGAAGAGATTGAAGATAACGAGGGTAGACGCGTTTGGGTGTTAA 528 0.4848 MGKASSSSSSSISSNNHPLISTASSLTRLHNSDHLPTDLRLGLSISATQHAGSSVSRGQPTDWIPNQRGYGAEVNDCGDHSSMFVKVYMEGIPIGRKLNLVAHEGYHELVRTLENMFDTTILWGTGMDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDAFGC 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0367 175 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Alju01g0367 175 Gene3D - 77 174 - -
Alju01g0367 175 SUPERFAMILY CAD & PB1 domains 79 167 - -
Alju01g0367 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 36 170 IPR003311 GO:0005634|GO:0006355
Alju01g0367 175 Pfam AUX/IAA family 78 169 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0367 Alju-ChrAlju01 2790142 2790931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0367 86 167 B3 DNA Binding Superfamily AT4G23980 40.244 7.44e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Alju01g0367 AUX_IAA 5.4e-29 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0367 01 2790142 2790931 Alju03g3110 03 55830829 55831666 CCT