LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g0364	ATGGGGAGGCACTCTTGCTGCTACAAGCAAAAGCTTCGCAAGGGTCTCTGGTCCCCTGAAGAGGACGAGAAACTCCTCAGGCATATCACGAAGTATGGCCATGGCTGCTGGAGCTCTGTTCCTAAGCAAGCAGGGTTGCAGAGATGTGGAAAGAGCTGTAGGCTGAGGTGGATCAACTACCTAAGGCCTGATTTGAAGAGAGGCACATTCTCACAAGAAGAGGAAAACCTCATCATTGAGCTTCATGCAGTATTAGGCAATAGGTGGTCACAAATTGCAGCACATCTACCTGGAAGAACAGACAATGAAATAAAGAATCTGTGGAATTCATGCCTCAAGAAGAAGCTGAGGCAAAGAGGGATAGACCCTGTAACTCATAAACCACTGCTGGAGGTTGAAAATAATGGAGATACTCAGGACAGAGATGGAGAGAAAGTTGGAGGAGTTAGTTCGAATGAATTGAACCTCCTGAAATCAGAAAGCTCCAGGTCGGATGGAGCTTCTTCCTACGAGCACAACAGACCATGTTCAAGTACTATGATTGCCCCAAATAACAAAGCCTATGTACACGACATGGAAGGTTCATCTTCCACCTCCAAGATTAACACCCCCACTAATTTCATCTCCTCCGATTGTTCCACTAAAGACTTGTTCCTCGACACCTACACCACCACTTCAGATTTCATGACCAGTTTCCCTCTTCACAACATCAACTACAACAACAATAATCCACCCACTAACGACTCTTCTCGTTGGTTCTCTACTCAAACTCAAGCAAGACCATTTGATATCAATACTACTACTGAATTTGCCTTCCCACTTTCAACCTCTTCGTTTCTCCCAAACTCTGTCTGCTACAAGCCTTCTCTCCCAGTTCCATCTGATGACATCTCCACAGGTTCCTTCTCCATGAATAATGAATCTCAGTACTGGGAAGCCACCGCTTCCAACCACAGTAATAGAAACAGCCCCTTCAACTTATTGCACAACAACACTAGTGTTTCTTATCAGATGAATGTGATGGGGAGTCAGACGACAGAAGAGGCAAGGTGGGCTGATGAGTACCTTCATAGTAACCCAATCGTAATGCTGGCTGCTCTACACAATCATCAAGCTCCTGAATCCTTGTGCAACGACATAAAGCCGGCCTCACATTTGGGACCTGATGCTTTGCCTCATCATCATCATCATCAGCCTTTACAAACTTCTGCTATTTTCACAAAGGACATCCAGAAGCTCACCGCAGCTTTCGGACATATATAA	1263	0.4529	MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAHLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLLEVENNGDTQDRDGEKVGGVSSNELNLLKSESSRSDGASSYEHNRPCSSTMIAPNNKAYVHDMEGSSSTSKINTPTNFISSDCSTKDLFLDTYTTTSDFMTSFPLHNINYNNNNPPTNDSSRWFSTQTQARPFDINTTTEFAFPLSTSSFLPNSVCYKPSLPVPSDDISTGSFSMNNESQYWEATASNHSNRNSPFNLLHNNTSVSYQMNVMGSQTTEEARWADEYLHSNPIVMLAALHNHQAPESLCNDIKPASHLGPDALPHHHHHQPLQTSAIFTKDIQKLTAAFGHI	420

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g0364	420	PANTHER	MYB DOMAIN PROTEIN 55	1	330	-	-
	Alju01g0364	420	MobiDBLite	consensus disorder prediction	152	177	-	-
	Alju01g0364	420	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Alju01g0364	420	FunFam	MYB transcription factor	68	140	-	-
	Alju01g0364	420	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Alju01g0364	420	MobiDBLite	consensus disorder prediction	133	147	-	-
	Alju01g0364	420	Gene3D	-	69	116	-	-
	Alju01g0364	420	SMART	sant	13	63	IPR001005	-
	Alju01g0364	420	SMART	sant	66	114	IPR001005	-
	Alju01g0364	420	SUPERFAMILY	Homeodomain-like	12	108	IPR009057	-
	Alju01g0364	420	CDD	SANT	17	61	IPR001005	-
	Alju01g0364	420	Gene3D	-	11	67	-	-
	Alju01g0364	420	MobiDBLite	consensus disorder prediction	127	177	-	-
	Alju01g0364	420	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Alju01g0364	420	Pfam	Myb-like DNA-binding domain	67	111	IPR001005	-
	Alju01g0364	420	FunFam	Myb transcription factor	11	67	-	-
	Alju01g0364	420	CDD	SANT	69	109	IPR001005	-
	Alju01g0364	420	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Alju01g0364	420	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g0364	Alju-ChrAlju01	2738849	2740278	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g0364	1	145	MYB Transcription Factor Family	AT4G01680	88.276	1.92e-92	277

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Alju01g0364		Myb_DNA-binding	2e-14	CL0123