Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0340 ATGGCGTGGAGAGAGCTTGGAAGAAAGAGAATATATATGAACTTTGCCAGAGCTTTGGCCACAGTACCATCTAGGCATGTTGCACGGTCATATTATTCGTCCACCTTTGCAGCAAAATCTGTTTATGCATCTGCAGGATGTTTGACTGAGTTTACCAGTCACCCATCTGCCGGAGCAGCTGGTTTTTGCAACGGAACAAAAGAACATGGAATAAAATACCGGTGGCTCCATGCTAATCCAGAACTATTAGCGAGGAGAAATGATGAGTTATTTGGTTTGAAGACTCCAAAGAAGGAGAAGCGTGTGAGAAGGGACAGTAAAAATCAACCCCCTGTTGAAGCTCCGTATGTTCCTCGTAATGTGGTCAAATCTACCAAATCCGTTCCTGATAAAACAATTGAAATATTTGAATGCATGACTCTTGCTGAGTTGGCAAAGCGTACTGGAAAGTCAGTATCTTCTCTGCAAGATATTCTAGTAAATGTTGGGGAAAAGGTTGAATCAGAGTTTGAGCCTCTCAGTGTTGATATTGCAGAACTTATTGCAATGGAAGTTGGTGTCTACGTGAAGAGGCTACATTCTACTGAAGGTTCAGAGATTTTACCCCGGCCTGCAGTTGTAACAGTGATGGGTCATGTTGACCATGGTAAAACCTCCCTTCTCGATGCTTTGCGCCAAACATCAGTGGCAGCCAAGGAGGCTGGGGGTATAACTCAGCATCTAGGTGCCTTTGTGGTGGCCATGCCATCAGGAGCATCAATCACATTTCTGGACACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCTGCAGTTACAGATGTGGTGGTACTTGTCGTTGCTGCAGATGATGGTGTGATGCCTCAAACACTTGAAGCTATATCCCATGCAAAAGCAGCTAATGTACCAATAGTAGTTGCAATAAATAAATGTGATAAACCGGGAGCAAATCCTGAAAGTGTTAAACTTCAGCTTGCATCAGAGGGCTTGTTGCTGGAAGAGATGGGTGGCGATGTTCAGGTGGTTGAAGTTTCTGCAACTATGAAAACTGGACTCGATAACTTGGAGGAAGCTTTGCTCCTTCAGGCTGAAGTGATGGATCTGAAAGCTCGAATTGATGGCCCTGCCCAAGCTTATGTGGTGGAAGCAAGGCTTGATAGAGGACGGGGTCCATTAGCTACTGCTATTGTGAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTGGTTATAGGCTCAGAATGGGGAAAAATAAGGGCTATTAGAGAAGTGACGGGTAAGTTGACTGACAGAGCAACACCTGCAATGCCTATTGAGATTGAAGGGCTTCGGGGAACTCCCATGGCTGGTGATGATGTTATTGTTGTTCAGTCAGAGGAGCGAGCACGATTGCTTAGTGCTGGTAGGAAAAGGAAATATGAGGAGGATAGGCTTAAGAAAATGGTTGAGGAAAGGGCAGATTCTGTGGAGTCATCTGAGGATGTTCCTCAGAGGGTTGAATTGCCAATATTAGTGAAAGCTGATGTTCAGGGCACCGTTCAAGCTGTCACAGATGGGTTGAGAACTTTAAATAGTTCTCAGGTTTTCGTGAACGTTGTCCATGTTGGTGTAGGGCCTATTTCTCAATCTGATGTGGACCTAGCTCAGGCTTGCGGTGCATGCATAGTTGGATTCAATGTGAAGAATCCACCTGGTCCTGTTAGTCAGGCAGCAGGCCGTGCCAATATAAAGATAGTGCTGCACCGTGTGATTTACCACCTCTTGGAGGAGATAGGCAATTTGATAATAGAGAAGGCTCCAGGGACATCTGAAACGCAGGTAGCCGGGGAGGCAGAGGTGCTGAGCATATTTGAGCTTAAAGGAAGGAGCAAGTCTAAGGGGCCTGATGTGAAGATAGCCGGCTGCCGGGTTATCGACGGTTGTGTGACAAGATCAGGAACCATGAGGCTTCTGAGGAGTGGGGAAGTGATGTTTGAAGGAAACTGTGTGTCCCTGAGAAGGGAAACGCAGGACGTGGATGCAGTGAAGAAGGGAAGTGAGTGTGGACTGGTAATAAATGACTGGCACGATTTCCAGGTTGGAGATGTCATACAGTGCTTGGAACAAGTGGTGAGGAAGCCCAGGTTCATTAAATCGCAGAGTGGAGCTGTTCGAATTGAGTGTTGA 2172 0.4645 MAWRELGRKRIYMNFARALATVPSRHVARSYYSSTFAAKSVYASAGCLTEFTSHPSAGAAGFCNGTKEHGIKYRWLHANPELLARRNDELFGLKTPKKEKRVRRDSKNQPPVEAPYVPRNVVKSTKSVPDKTIEIFECMTLAELAKRTGKSVSSLQDILVNVGEKVESEFEPLSVDIAELIAMEVGVYVKRLHSTEGSEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHLGAFVVAMPSGASITFLDTPGHAAFSAMRARGAAVTDVVVLVVAADDGVMPQTLEAISHAKAANVPIVVAINKCDKPGANPESVKLQLASEGLLLEEMGGDVQVVEVSATMKTGLDNLEEALLLQAEVMDLKARIDGPAQAYVVEARLDRGRGPLATAIVKAGTLVCGQHVVIGSEWGKIRAIREVTGKLTDRATPAMPIEIEGLRGTPMAGDDVIVVQSEERARLLSAGRKRKYEEDRLKKMVEERADSVESSEDVPQRVELPILVKADVQGTVQAVTDGLRTLNSSQVFVNVVHVGVGPISQSDVDLAQACGACIVGFNVKNPPGPVSQAAGRANIKIVLHRVIYHLLEEIGNLIIEKAPGTSETQVAGEAEVLSIFELKGRSKSKGPDVKIAGCRVIDGCVTRSGTMRLLRSGEVMFEGNCVSLRRETQDVDAVKKGSECGLVINDWHDFQVGDVIQCLEQVVRKPRFIKSQSGAVRIEC 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0340 723 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 202 372 IPR000795 GO:0003924|GO:0005525
Alju01g0340 723 Gene3D - 200 374 IPR027417 -
Alju01g0340 723 NCBIfam small GTP-binding protein domain 205 357 IPR005225 GO:0005525
Alju01g0340 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 371 IPR027417 -
Alju01g0340 723 Gene3D Translation factors 605 708 - -
Alju01g0340 723 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 494 610 IPR036925 -
Alju01g0340 723 FunFam Translation initiation factor IF-2 606 710 - -
Alju01g0340 723 Hamap Translation initiation factor IF-2 [infB]. 8 709 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Alju01g0340 723 Pfam Translation-initiation factor 2 482 593 IPR023115 -
Alju01g0340 723 FunFam Translation initiation factor IF-2 199 374 - -
Alju01g0340 723 Gene3D Translation factors 375 493 - -
Alju01g0340 723 Gene3D - 498 603 IPR036925 -
Alju01g0340 723 SUPERFAMILY Translation proteins 606 707 IPR009000 -
Alju01g0340 723 CDD IF2_mtIF2_II 378 473 IPR044145 -
Alju01g0340 723 FunFam Translation initiation factor IF-2 499 605 - -
Alju01g0340 723 SUPERFAMILY Translation proteins 376 458 IPR009000 -
Alju01g0340 723 CDD mtIF2_IVc 611 701 - -
Alju01g0340 723 Pfam Elongation factor Tu GTP binding domain 207 363 IPR000795 GO:0003924|GO:0005525
Alju01g0340 723 CDD IF2_eIF5B 206 369 - -
Alju01g0340 723 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 112 718 IPR015760 -
Alju01g0340 723 NCBIfam translation initiation factor IF-2 130 706 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0340 Alju-ChrAlju01 2549706 2553758 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0340 203 593 Eukaryotic Initiation Factors Gene Family AT1G21160 28.070 1.88e-27 117