Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0336 ATGTTGACCATGGTTAGTCATGCTGTCCCTAGTGTAGGTGACAACCCTGCCCTTGGCATTGGCACCGACATAAGAACCATATTCACTGCTCCAAGTGCTTCTGCATTGCAGAAAGCCTTAGGATTTGGGGAAGTTTCACTTCTCAACCCCATTCTTGTCCATTGCAAGACCTCAGGGAAACCCTTTTATGCAATTATCCATCGTGTGACTGGAAGCTTGATAATTGATTTTGAGCCAGTCAAGCCTTTTGAAGTTCCCATGACTGCAGCTGGTGCCCTCCAATCTTACAAACTTGCTGCCAAAGCAATCACTACATTGCAATCTTTGCCTAGTGGGAGTATGGAAAGGCTATGTGATACGATGGTTAAAGAAGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGGGAAGTAATTGCTGAGATCACAAAGCCGGGTTTAGAGCCATATCTGGGTTTGCATTACCCAGCCACTGACATTCCACAGGCTGCACGTTTTCTATTTATGAAGAATAAGGTGCGTATGATAGTAGATTGTCGTGCAAGGCATGTGAAGGTGCTTCAAGATGAAAAACTTCCATTTGAGTTAACCTTGTGCGGTTCAACCTTGAGGGCCCCTCATAGTTGCCATTTGCAATATATGGAGAACATGAATTCCATTTCTTCCCTGGTTATGGCAGTGGTGGTCAATGACAATGATGAAGATGTGGACAGCTCTGATTCTATCCAGCCACAGAAGAGAAAGAGACTTTGGGGTTTAGTAGTTTGTCATAATACTACACCAAGGTTTGTACCTTTTCCTCTTCGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAATAAAGAATTAGAGTTAGAAAACCAAATTGTTGAGAAAAACATCCTGCGCACCCAGACACTTCTATGTGATATGCTGATGCGAGATGCACCCCTAGGTATTATATCACAGAACCCAAATATAATGGATCTTGTGAAATGTGATGGGGCTTCCCTCTTGTATAAAAACAAGGTATGGAGACTAGGAGTAACGCCAAGCGAATCCCAGATCCGAGAGATATCTATATGGCTCTCTGAGAACCATATGGATTCCACAGGTTTAAGTACAGATAGCCTGGCTGAAGCAGGGTTACCAGGTGCTCTTGCTCTTGGTGATGTAGTATGTGGGATGGCAGCTGTGAGAATATCTTCAAAAGATATGGTTTTCTGGTTTCGATCGCATACTGCTGCAGAAATTCGATGGGGTGGTGCAAAGCATGAGCCTGGTGAACAGGATGACAATAGGAGGATGCATCCAAGATCATCATTTAAAGCTTTCCTTGAAGTTGTGAAGGCAAGGAGCTTACCATGGAAGGACTATGAAATGGATGCTATCCATTCCTTGCAATTAATCCTGAGGAACGCATTTAAAGATAAAGGGAGTATGGATGTAAATACCAATGCAATTAACACTAGATTGAGCGATTTGAAGATTGAAGGTATGCAGGAATTGGAGGCAGTGACAAGTGAGATGGTTCGGTTAATTGAAACAGCAACAGTGCCAATTTTGGCTGTTGATGTTGATGGGCTGATCAATGGGTGGAACACAAAAATTGCTGAGTTGACGGGTCTTCCAGTTGATGAAGCAATTGGGAAGCATCTACTCACACTAGTTGAGGATTCTTCAACTGATAGGGTCAAGAAGATGTTGGACATGGCACTGCAAGGTGAAGAAGAGCAGGACGTTCAATTTGAGATCAAAACACATGCATCTAAGATTGATTCCGGTCCTATCAGGTTGGTTGTTAATGCTTGTGCAAGTAGAGACCTTCGAGACAACGTAGTGGGGGTTTGTTTCGTGGCCCAAGATATAACTGCTCAGAAGACAGTTATGGACAAATTCACCCGAATTGAAGGTGATTACAAGGCGATTGTCCAGAATCCTAACCCATTGATCCCCCCAATATTTGGTACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCCGCAATGATCAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGACAAAATGCTCTTAGGGGAGGTCTTTGGAACTCATGCAGCTTGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTCAATTTTGGAATTGCACTTAATAAAGCCATGACTGGTTTGGAAACTGAGAAGGTTGCTTTTGGCTTTTTTGCTCGGAATGGGAATTATGTGGAGTGCCTTCTTTCTGTGAGTGAGAAGTTGGACATAGAGGGTACAGTTACTGGGGTTTTCTGCTTCCTGCAGCTAGCTAGCCCAGAGTTGCAACAAGCATTACATATTCAGCGGCTATCTGAACAAACTGCCTTGAAGAGACTGAAAGCTTTAACGTACATGAAAAGGCAGATACGGAATCCTTTAGGTGGGATTGTGTTCTCCCGTAAAATGTTGGAGGGTACTGAGTTGGGAACTGAACAGAAACAACTCCTGCACACTAGTTCCCTGTGCCAGCGCCAGCTCAGCAAAGTTCTTGATGATTCTGATCTTGACTACATCATTGATGGGTACTTAGATCTGGAGATGGTTGAATTTACTATGCATGAAGTTTTGGTTGCCTCTATCAGTCAAGTAATGACACAGAGCAATGAAAAGGGCGTCAGAATAGTGAACGAGGTGGCAGAGCAGATCACGACAGAGACATTGTATGGTGACAGTATCAGGCTTCAACAAGTCTTAGCTGACTTCTTATTGATGTCCGTCGCTTTTACACCCTCTGGAGGTAAGGTGGTTGTTGCAGCCTCTTTAACCAAAGATCAGTTGGGACAATCCGTCCATCTTGCCAATTTGGAGCTCAGCATAACACATGCTGGAAGTGGGATTCCGGAAGCATTACTAAACCAGATGTTTGGAAGTGATGGACAAGAGTCTGAGGAGGGTATTAGCCTGCTTATTAGTAGAAAACTGGTAAAGCTCATGAACGGTGATGTCCGCTATCTGAGGGAAGCAGGCAAATCATCCTTCATTTTAACTGTTGAACTCGCTGCAGCCCAGAAACCGAGGGCTTAA 3060 0.4366 MLTMVSHAVPSVGDNPALGIGTDIRTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPFEVPMTAAGALQSYKLAAKAITTLQSLPSGSMERLCDTMVKEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFELTLCGSTLRAPHSCHLQYMENMNSISSLVMAVVVNDNDEDVDSSDSIQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIISQNPNIMDLVKCDGASLLYKNKVWRLGVTPSESQIREISIWLSENHMDSTGLSTDSLAEAGLPGALALGDVVCGMAAVRISSKDMVFWFRSHTAAEIRWGGAKHEPGEQDDNRRMHPRSSFKAFLEVVKARSLPWKDYEMDAIHSLQLILRNAFKDKGSMDVNTNAINTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLINGWNTKIAELTGLPVDEAIGKHLLTLVEDSSTDRVKKMLDMALQGEEEQDVQFEIKTHASKIDSGPIRLVVNACASRDLRDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMIKLTGWKREEVMDKMLLGEVFGTHAACCRLKNQEAFVNFGIALNKAMTGLETEKVAFGFFARNGNYVECLLSVSEKLDIEGTVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKALTYMKRQIRNPLGGIVFSRKMLEGTELGTEQKQLLHTSSLCQRQLSKVLDDSDLDYIIDGYLDLEMVEFTMHEVLVASISQVMTQSNEKGVRIVNEVAEQITTETLYGDSIRLQQVLADFLLMSVAFTPSGGKVVVAASLTKDQLGQSVHLANLELSITHAGSGIPEALLNQMFGSDGQESEEGISLLISRKLVKLMNGDVRYLREAGKSSFILTVELAAAQKPRA 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0336 1019 ProSiteProfiles PAC domain profile. 585 641 IPR000700 -
Alju01g0336 1019 Pfam GAF domain 113 296 IPR003018 GO:0005515
Alju01g0336 1019 ProSitePatterns Phytochrome chromophore attachment site signature. 213 222 IPR013516 -
Alju01g0336 1019 Gene3D PAS domain 658 770 - -
Alju01g0336 1019 FunFam Phytochrome 301 432 - -
Alju01g0336 1019 CDD HATPase_Phy-like 900 1011 IPR044767 -
Alju01g0336 1019 Gene3D - 94 457 IPR029016 -
Alju01g0336 1019 PANTHER TWO-COMPONENT HISTIDINE KINASE 788 1010 - -
Alju01g0336 1019 SUPERFAMILY PYP-like sensor domain (PAS domain) 659 765 IPR035965 -
Alju01g0336 1019 SMART pas_2 644 713 IPR000014 -
Alju01g0336 1019 SMART pas_2 514 580 IPR000014 -
Alju01g0336 1019 SMART HisKA_10 789 850 IPR003661 GO:0000155|GO:0007165
Alju01g0336 1019 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 851 1008 IPR036890 -
Alju01g0336 1019 Coils Coil 293 313 - -
Alju01g0336 1019 SMART HKATPase_4 901 1013 IPR003594 -
Alju01g0336 1019 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 113 286 IPR016132 -
Alju01g0336 1019 CDD PAS 656 767 IPR000014 -
Alju01g0336 1019 SUPERFAMILY GAF domain-like 304 482 - -
Alju01g0336 1019 SUPERFAMILY PYP-like sensor domain (PAS domain) 16 81 IPR035965 -
Alju01g0336 1019 Gene3D - 852 1016 IPR036890 -
Alju01g0336 1019 Gene3D - 301 474 IPR043150 -
Alju01g0336 1019 Pfam Phytochrome region 309 483 IPR013515 GO:0006355|GO:0009584
Alju01g0336 1019 ProSiteProfiles PAS repeat profile. 512 582 IPR000014 -
Alju01g0336 1019 Pfam PAS fold 645 767 IPR013767 GO:0006355
Alju01g0336 1019 Pfam PAS fold 515 629 IPR013767 GO:0006355
Alju01g0336 1019 SUPERFAMILY GAF domain-like 93 293 - -
Alju01g0336 1019 CDD PAS 523 629 IPR000014 -
Alju01g0336 1019 FunFam Phytochrome 508 639 - -
Alju01g0336 1019 NCBIfam PAS domain S-box protein 519 635 IPR000014 -
Alju01g0336 1019 Gene3D PAS domain 12 216 - -
Alju01g0336 1019 ProSiteProfiles Histidine kinase domain profile. 796 1015 IPR005467 -
Alju01g0336 1019 PRINTS Phytochrome signature 515 531 IPR001294 GO:0006355|GO:0009584
Alju01g0336 1019 PRINTS Phytochrome signature 326 346 IPR001294 GO:0006355|GO:0009584
Alju01g0336 1019 PRINTS Phytochrome signature 627 647 IPR001294 GO:0006355|GO:0009584
Alju01g0336 1019 PRINTS Phytochrome signature 28 50 IPR001294 GO:0006355|GO:0009584
Alju01g0336 1019 PRINTS Phytochrome signature 213 234 IPR001294 GO:0006355|GO:0009584
Alju01g0336 1019 PRINTS Phytochrome signature 411 430 IPR001294 GO:0006355|GO:0009584
Alju01g0336 1019 PRINTS Phytochrome signature 444 462 IPR001294 GO:0006355|GO:0009584
Alju01g0336 1019 PRINTS Phytochrome signature 534 549 IPR001294 GO:0006355|GO:0009584
Alju01g0336 1019 PRINTS Phytochrome signature 607 624 IPR001294 GO:0006355|GO:0009584
Alju01g0336 1019 PRINTS Phytochrome signature 128 147 IPR001294 GO:0006355|GO:0009584
Alju01g0336 1019 Gene3D PAS domain 506 643 - -
Alju01g0336 1019 ProSiteProfiles PAS repeat profile. 645 697 IPR000014 -
Alju01g0336 1019 Pfam PAS fold 16 80 IPR013654 GO:0006355
Alju01g0336 1019 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 901 1011 IPR003594 -
Alju01g0336 1019 SUPERFAMILY PYP-like sensor domain (PAS domain) 518 625 IPR035965 -
Alju01g0336 1019 SMART gaf_1 113 306 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0336 Alju-ChrAlju01 2536549 2540652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0336 1 1016 Histidine Kinase Gene Family AT1G09570 80.629 0.0 1735
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0336 01 2536549 2540652 Alju03g3134 03 55986414 55995580 CCT
Alju01g0336 01 2536549 2540652 Alju01g0336 01 2536549 2540652 ECH