Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0328 ATGGGAAGACACTCTTGCTGTTACAAGCAGAAACTTAGGAAAGGCCTCTGGTCTCCCGACGAAGACGAGAAGCTTCTCAGTCACATCACCAAGCACGGCCATGGCTGTTGGAGCTCCGTCCCCAAACTCGCCGGTTTGCAGAGGTGTGGCAAGAGCTGCAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAAAGAGGAGCATTCTCGCAGCAGGAAGAGGATTTGATAATTGAACTCCATGCAGTCTTGGGCAACAGGTGGTCACAGATTGCAGCTCAGCTACCAGGAAGAACTGACAATGAGATTAAGAATCTATGGAATTCCTGCCTCAAGAAGAAGCTCAGGCAAAGAGGCATTGACCCCAACACCCACAAGCCACTCTCTGAGGTTGAGAACGACAAGGACAAGCCCCCCTCAGCTGACAAAAGCCATCGCAAAGAACTGAGTATTATAACAGAGCCTTCAAAGCCAAAGCCAAACGCAGTAATGCCTTCGGAGCGATACCCAGTTGAAGTTTCTTCCGGCTCCAACAAGATCAGCAATGGCTGCACCATTAGCAGCAATTTGACCAGCAGCCGACCCACCCAGGATTTGTTCCTCGATAGCTCCATCACCAGTTGTGGTCCTTCTGATATGATGGGTTACTTCTCTTTCCAGCAGTTGAACTATCCACCACATGTTGGCCTCTGCGCAAATCCCAACGGCTCTCTCTGCTTCATGTCAGGTTCCAGTTCCTCTCAGGTGATGTCAGAGCTCAATTCTAGTATGCTTAACTCTGTGCCAAGCTCGATTTTCTCAACAACACATGTAAGTACCACTGTTAGTCTCCAGTCTGATAATCCATCCATATCCTCTGGCGATATTGATGGAGTTCAGAACTGGGAAGCCAGTATCCTCGCTAACAACGGCACCAAAAGCAATGGGCGCAGTGGGAGTACCCAGTTGCAAAGCAGCAGCAACTTCCTTGAGAACAACAGTTTAGCATGGGCATTGGCAGACTCTGTGAAGGCTAATAAAGATGCTCAAGTACCCCTACAAGCAGAACAAGAAGACATTAAATGGTCTGAGTATCTGAACACCCCATTTTTTATGGGGAACACAGCACAGAATCAAAACTGTCAATCTATTTACAGTGAGGTTAAACCAGAGACAGGCTTCATAACAGATGAATCGGGTACCAGTTGGCACCACACACAGCATCCGTCCCTTTTTCAAGCTTCAGATATCTACACCAAGGATCTGCAAAGATTCTCAGTGGCTTTTGGACAAACCCTGTAG 1284 0.479 MGRHSCCYKQKLRKGLWSPDEDEKLLSHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENDKDKPPSADKSHRKELSIITEPSKPKPNAVMPSERYPVEVSSGSNKISNGCTISSNLTSSRPTQDLFLDSSITSCGPSDMMGYFSFQQLNYPPHVGLCANPNGSLCFMSGSSSSQVMSELNSSMLNSVPSSIFSTTHVSTTVSLQSDNPSISSGDIDGVQNWEASILANNGTKSNGRSGSTQLQSSSNFLENNSLAWALADSVKANKDAQVPLQAEQEDIKWSEYLNTPFFMGNTAQNQNCQSIYSEVKPETGFITDESGTSWHHTQHPSLFQASDIYTKDLQRFSVAFGQTL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0328 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Alju01g0328 427 FunFam Myb transcription factor 11 67 - -
Alju01g0328 427 MobiDBLite consensus disorder prediction 119 154 - -
Alju01g0328 427 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju01g0328 427 FunFam MYB transcription factor 68 140 - -
Alju01g0328 427 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju01g0328 427 MobiDBLite consensus disorder prediction 119 166 - -
Alju01g0328 427 CDD SANT 17 61 IPR001005 -
Alju01g0328 427 Gene3D - 68 146 - -
Alju01g0328 427 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju01g0328 427 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Alju01g0328 427 SMART sant 66 114 IPR001005 -
Alju01g0328 427 SMART sant 13 63 IPR001005 -
Alju01g0328 427 PANTHER MYB DOMAIN PROTEIN 55 1 335 - -
Alju01g0328 427 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Alju01g0328 427 CDD SANT 69 109 IPR001005 -
Alju01g0328 427 Gene3D - 11 67 - -
Alju01g0328 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0328 Alju-ChrAlju01 2485550 2487021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0328 1 427 MYB Transcription Factor Family AT1G09540 48.394 2.27e-121 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju01g0328 Myb_DNA-binding 5.1e-14 CL0123