Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0326 ATGCCTCTTTACGAGTTATACAGAATGACTAAAGCGAAGCTTGATTCTAAAGAGAAAGACAACACAAGTGCAACCGATCAATCTTCCGCACCGGAGAATGACTTTTTGGAGCTGGTTTGGGAAAATGGTCAGATTTCGATGCAGGGTAAGTCAAGCAGAGCAAGAAAGAGCCCAGTACATAAGAGCCTTCCATCTCACTGCTTACCATCTCACAGTCCAAGGACTCGAGAGAAAGATGTAGGATTTAGTATCGATACAAGGATGGGTAAGTTAGGGCATTTAGACTCTGGATTAAATGAATTTCCGATATCTGTTCCTTCGGATGAAATGAATTTGAGTCAAGATGAAGACATGATACCTTGGTTAAATTATCCAATGGATGACTCTTTACAACATGAATATAGTTTTGATTTCACGCGTGATGTCTCTGGGTTCACCTTAAATGAGCTCCCAGCTACCTCAAATAATTTTCCTCTGATGGATAAAAGAAGTAGCGGCAATCAGGTATGTAAGGACTCTCACAGAAGTCCTGTGCCTGGTGTTTCAAGTTCAGAACAAGCAAATATTGCCAAGGGATCTTCAACTGGAGAAGTTGAACCTAGTGGGCCGAAGGGAAACAATAGCCAGTTATACCCACCATCATTGCAGCAATGTCAAACATCATTTGGATCTATTAGACCCAAAATATCAGATAGCACTGAAAATAATACAAGTAATGCAATACTGCAAGCACCTTGCGGGGAAATCACTCAGACTCCATCTTCCTCTAGTGGTTTTTGTAGTCTAAATATGCAGAAACAAGATCCTTTATGTCCTAGGAATAGTTCTAACATGATGAATTTCTCCCACTTTGCAAGACCTGCCGCCATTGTGAGAGCTAATCTTCAGAGCATCAGTATGATGTCTGGTTTATCTTCAGCAAGATCAGAAAGCTTGGGAACTAGGAAAAAAGATGTTGATGCAAGTAGCAGCAACCCTCCTGAATCAACACTCGTTGATTTAAATAATCAAAAGAACTGCCAAAAGCTGGTCATAGACCCATCAAAGGCTGAGTTGAAACCAGCCAATCCAAAATCTCTCGAACAGAAGGCTGATTTTGCTAAGCAGTTTGACCCTGCTTGCAAAGATGACGGTGCATGTAAGAATAATCAAATTTCCGATCAAGTTCCCACGGAAAGTGGCAATAAAGGACAACCAGCTGTTGAAAAAAGCATTAGCCCTGAAGTAGCCTCTTCCTCTGTTTGCTCAGGAAACGGCATGAAGAGAGGTTCTGATAATGCAAATAAGAATTTGAAGCGAAAAAGTCAAGATACTGAAGACTCTGAGTGTCAAAGTGAAGAAGTCGAGGAAGAATCAGTGGGCATTAAAAAGGCAGCTCCTGCTCGAGGTACAAGTTCTAAGAGAAGTCGTGCCGCTGAAGTGCATAATCTATCTGAAAGGAGGCGGAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGAACTCATCCCAAATTGCAATAAGGTGGATAAAGCATCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTGTATGCGCCCCTTAATCAAATGATGTTACACCCAGGAATGCAGCACATGCAGACCCCACATATGGCTTCATTCTCACCCATAGGAATTGGCATGCAAATGGGGTTAGGAATGGGCTATGGGATGAGCATGTCTGACATGAATAGTGGGTCCCCTAGATTCCCAATGGTTCAGGTGCCCCAAATGCAGGGAACTCATTACCCTGTTTTACCTATGCCTGGACCAACTGCTGCTTTACATGGGATGCCAAGATCAAGTCCTCAGGTATTCGGGTTTCCTGGTCAGGGACTTTACTTGCCAATGCCAAATGCTCCAGGAGTTTCTATGCCAGGAGGGCCCCTTATGAATCCTTCGACTTCAGGACAAAACGCCTTTGGAGCTGGCGGACTTAGGGAAACTGTTGATTCGGCTTCAGCCTCTAGTTTAAAGGATCCAATGCCAAACGTGAATTCACAAGTTATGCCAAGCACAGGTGGCAGTAACTCTACAATGCAGATGTCTGCTCAGTGTGAAGCAACGAATGCTGGAATTGATCAGACAGCACCAGTGTACACTAGCGGGCATACCTCCAATATTAATGACAGTGGAACAACAAATAGTGGCAAAGAAGATAACCTTGTTATCGGTAAATCTTGTAAATGA 2235 0.43 MPLYELYRMTKAKLDSKEKDNTSATDQSSAPENDFLELVWENGQISMQGKSSRARKSPVHKSLPSHCLPSHSPRTREKDVGFSIDTRMGKLGHLDSGLNEFPISVPSDEMNLSQDEDMIPWLNYPMDDSLQHEYSFDFTRDVSGFTLNELPATSNNFPLMDKRSSGNQVCKDSHRSPVPGVSSSEQANIAKGSSTGEVEPSGPKGNNSQLYPPSLQQCQTSFGSIRPKISDSTENNTSNAILQAPCGEITQTPSSSSGFCSLNMQKQDPLCPRNSSNMMNFSHFARPAAIVRANLQSISMMSGLSSARSESLGTRKKDVDASSSNPPESTLVDLNNQKNCQKLVIDPSKAELKPANPKSLEQKADFAKQFDPACKDDGACKNNQISDQVPTESGNKGQPAVEKSISPEVASSSVCSGNGMKRGSDNANKNLKRKSQDTEDSECQSEEVEEESVGIKKAAPARGTSSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYAPLNQMMLHPGMQHMQTPHMASFSPIGIGMQMGLGMGYGMSMSDMNSGSPRFPMVQVPQMQGTHYPVLPMPGPTAALHGMPRSSPQVFGFPGQGLYLPMPNAPGVSMPGGPLMNPSTSGQNAFGAGGLRETVDSASASSLKDPMPNVNSQVMPSTGGSNSTMQMSAQCEATNAGIDQTAPVYTSGHTSNINDSGTTNSGKEDNLVIGKSCK 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0326 744 MobiDBLite consensus disorder prediction 177 215 - -
Alju01g0326 744 Coils Coil 431 451 - -
Alju01g0326 744 MobiDBLite consensus disorder prediction 381 425 - -
Alju01g0326 744 MobiDBLite consensus disorder prediction 426 441 - -
Alju01g0326 744 MobiDBLite consensus disorder prediction 318 333 - -
Alju01g0326 744 MobiDBLite consensus disorder prediction 378 479 - -
Alju01g0326 744 MobiDBLite consensus disorder prediction 712 744 - -
Alju01g0326 744 CDD bHLH_AtPIF_like 470 532 IPR047265 -
Alju01g0326 744 Gene3D - 465 528 IPR036638 GO:0046983
Alju01g0326 744 PANTHER TRANSCRIPTION FACTOR PIF3 1 697 IPR044273 GO:0003700|GO:0006355
Alju01g0326 744 MobiDBLite consensus disorder prediction 14 77 - -
Alju01g0326 744 Pfam Helix-loop-helix DNA-binding domain 474 520 IPR011598 GO:0046983
Alju01g0326 744 MobiDBLite consensus disorder prediction 306 333 - -
Alju01g0326 744 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Alju01g0326 744 MobiDBLite consensus disorder prediction 152 215 - -
Alju01g0326 744 MobiDBLite consensus disorder prediction 712 736 - -
Alju01g0326 744 SMART finulus 476 525 IPR011598 GO:0046983
Alju01g0326 744 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 534 IPR036638 GO:0046983
Alju01g0326 744 FunFam Basic helix-loop-helix transcription factor 465 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0326 Alju-ChrAlju01 2468550 2472644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0326 1 547 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.117 2.75e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju01g0326 HLH 8.2e-14 No_clan