Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0323 ATGACCAGAAACAGAGCGAGTCTGGCATATGTCTCCGACGACGCTGCAAGGAAAATAACATATAAGAAAAGGAAGAAGGGTCTGGCCAAAAAGGTGAGTGAACTAATCACTCTTTGCGGGATCCAAGCATGTGCTGTTCTTTTCAGCTCCTATGAATCTAAGCCAGAGGTTTGGCCGGATTCAAGTGCAGCTCAACAGGTGATCGCAAGGTTTCAGAACACATATGCTCGGGATGAGACAAGGAATTTGAACCAGGAGAGTTTTACTATGCAAAGGATTGCCAAGGTTAGTGCCCAGCTCAAGAAGCAACGTAAGGAGAATTCCAAGAAGGAGATGAACCTGGCTATGTTCCAGTGGGCTGAAGGGGGATCTTTGGATGATGAGGCCATGGTGGATCCTGATGAACTTGATTCCCTGGCCCAGGAGAACATAAACATCATCACCAACAAGATGCATCAGTTTATTTGA 468 0.4615 MTRNRASLAYVSDDAARKITYKKRKKGLAKKVSELITLCGIQACAVLFSSYESKPEVWPDSSAAQQVIARFQNTYARDETRNLNQESFTMQRIAKVSAQLKKQRKENSKKEMNLAMFQWAEGGSLDDEAMVDPDELDSLAQENINIITNKMHQFI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0323 155 Coils Coil 93 113 - -
Alju01g0323 155 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Alju01g0323 155 PANTHER MADS BOX PROTEIN 10 145 - -
Alju01g0323 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Alju01g0323 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju01g0323 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju01g0323 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju01g0323 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju01g0323 155 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Alju01g0323 155 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0323 Alju-ChrAlju01 2438972 2439439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0323 1 122 Type I MADS-box Gene Family AT5G48670 49.593 3.91e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju01g0323 SRF-TF 1.1e-14 No_clan