Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0277 ATGGACCATGTTTACAGATTAAACACGAAGGAGTCATCCCGTTCCGGTGATGTCAGAGTTGGTGACGTCGCTTGTTCTTCAGATCATCACTCGCATCGAGCTCCGGTGGCTCATGACTACGTACGGCTGCAAGTGCCTGATTCCGAAAGAACCGGGTCTGACGACGTGCCTGAGCCGGACCAGTTCATCAAGACCCAAATCGCCAGTCACCCGCTTTATCCTAATTTATTATCTGCTTACATTGAATGCCAAAAGGTCGGAGCTCCACCAGAACTGGCGTCCCTTCTGGAAGAAATGAACCGAGAAAATCACCCAATCGGTACTCAGCGTCAGATAGGGGACGATCCTCAACTTGACGCCTTCATGGAATCATACTGCGAGGTTCTTCGTAGATACAAAGAGGAGTTGTCCAGGCCCTTCAACGAAGCGACCTTGTTTTTGAGCAATGTCGAATCTCAGCTCCACGACCTTTGCAAAGGAACATTAACAAATTCAACGGGATGTCGATCCGAGGAGGCAGGTGTGAGTTTAGAAGAAGAACCAAGTTATGGTGAAGGGGAAGGTGATGTATCTTGTGGCAGTTGCCAAGCTGATAAAGAGATCAAAGAAATGCTTCTTCGTAAGTACAGTGGCTATCTCAGCAATCTGCGGAAGGAGTTCTTGAAGAAAAGGAAAAGTGGGAAGCTTCCTAAAGATGCCAGGATGACACTCCTCAACTGGTGGAACACCCACTACAGATGGCCTTATCCCACGGAGGAAGAGAAAGCGAGGCTATCGGAAATGAGTGGACTGAATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGGAAACGCCACTGGAAGCCATCTGATGATATGCGATTTGCCGTCTTGGAGGGTGTAAGTGGGGCCCCCTTGGGACCCCCTTTCTGCTTCAACGCTGCTCCTCCACCTCAACCTCATTGA 948 0.4873 MDHVYRLNTKESSRSGDVRVGDVACSSDHHSHRAPVAHDYVRLQVPDSERTGSDDVPEPDQFIKTQIASHPLYPNLLSAYIECQKVGAPPELASLLEEMNRENHPIGTQRQIGDDPQLDAFMESYCEVLRRYKEELSRPFNEATLFLSNVESQLHDLCKGTLTNSTGCRSEEAGVSLEEEPSYGEGEGDVSCGSCQADKEIKEMLLRKYSGYLSNLRKEFLKKRKSGKLPKDARMTLLNWWNTHYRWPYPTEEEKARLSEMSGLNQKQINNWFINQRKRHWKPSDDMRFAVLEGVSGAPLGPPFCFNAAPPPQPH 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0277 315 Pfam KNOX1 domain 63 104 IPR005540 GO:0003677|GO:0005634
Alju01g0277 315 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Alju01g0277 315 Pfam KNOX2 domain 111 158 IPR005541 GO:0003677|GO:0005634
Alju01g0277 315 Pfam ELK domain 200 221 IPR005539 GO:0003677
Alju01g0277 315 CDD homeodomain 223 284 IPR001356 GO:0003677
Alju01g0277 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 50 289 - -
Alju01g0277 315 MobiDBLite consensus disorder prediction 168 189 - -
Alju01g0277 315 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Alju01g0277 315 Gene3D - 218 290 - -
Alju01g0277 315 SMART KNOX2_2 108 159 IPR005541 GO:0003677|GO:0005634
Alju01g0277 315 SMART KNOX1_2 61 105 IPR005540 GO:0003677|GO:0005634
Alju01g0277 315 SMART ELK_2 200 221 IPR005539 GO:0003677
Alju01g0277 315 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
Alju01g0277 315 SUPERFAMILY Homeodomain-like 222 289 IPR009057 -
Alju01g0277 315 SMART HOX_1 222 287 IPR001356 GO:0003677
Alju01g0277 315 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0277 Alju-ChrAlju01 2140575 2143828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0277 13 298 Homeobox Transcription Factor Family AT1G23380 47.603 6.83e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Alju01g0277 KNOX2 1.8e-22 No_clan