Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0259 ATGCGGACGCCATTTGAACGTTCTCACAACAATAGCTCAATGTACGAATTAAACCCGTTATTTCTACGTCTCCTCCTCTGCAGCTTTTTCCCTTCCAAAGATTCCCACCTCAACTCTATATTCTCTCAGATGGTAAGGGGGGGAAAGGTTGGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGCAAGGGGATTCTGATGATTCGGATGAGGACTATGTGGTTCCAGATGAAGATAGAGAATTGTCTGATTGTTCGGAGGATTCATTGTCTTCTTTAGATGGATGTGAATCCGAGGAGGGTTTTGATAGCTTTGTAGAGGACGAGGAGGAGGAGGGAATTGAAGTAAGGAGGGAATTCAGTAGACCCAAGACAAAAAATGGCATTTGTGGTCGGCAGAAAATTGGCAGGAAACCCTCACAACAGAGAGGAAGGATAACTTACACACATCAACTAGAAGAAGAAGAATACAAAGAAGAAGAACAACAAGAAAAAGAAGAGGAAGGTGATGAAGAGACAGATGAATATGAGGAAGATGATGCTGATCAAGATTCTGATTGTGATGAGGATGAGGAATTTACACCTGAGGAAGAAGATTATTCAGATGAAGAAGAAATAAAGGTGAGAAAGAAGAGAAGTAATGGCATAAAAATGGGCAAGAAGGCTGTTCAGAAGCGGGCCTCTGTAACTTATACTAGAGGTTGTAAAAGAAGGAATTCTAGGACTGCAAGGAAGCCCTTGAGAAAGAAGAGAAGAAAGAATGGAGGGTTGAGGAGGAAAACAAAGTATGATGATGAGGGTGGTTTTATAGATAATGGTTCTACCATCAGAACCAAGAGTAAGAAAAATCCAGGACGAAAAAGGAGAAGACAAATCGTTGATTCAGATTCATACTCAGATCGTGTGTCATCTAGGTCATCTGATTATGAGTATACCATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGCAATTGTGTGGAAGATTGAAAACTAATTTGAGGAGTTCATCCCTTCTGACAAAAAATGAAGAGGATGTAGTCCATGAAGAACTACATCAGCAAAGAAAGCCTCCAGCCCGTAAAGGTAAGGAAAAGATAGAGGAACATCAGGGGAGAAAGGGCAAGGACAAAGTAGAGGATTTAAAAAGTAAGCCAGTAAAGCAGGTGTGTGGTATTTGTCTCTCTGAAGAAGATAAAAGAAGAGTAAGAGGAGTACTAGATTGTTGCACACATTTTTTCTGTTTTGCTTGCATTATGGAGTGGGCAAAAGTGGAATCTCGCTGCCCTTTGTGCAAGCAGAGATTTAAAACAATCAGTAAGCCTGCACGATCAACAACAGCAGGGGTTGATTTGAGAGGATCAGTTATACAAGTCCCCAAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGTATGTATTTTGTTCAGAGTGCCATCAAGGTGGAGACGATGATCTCATGTTATTGTGCGATCTCTGTGACTCTCCTGCACACACATATTGTGTTGGTCTGGGTCGTGAAGTACCTGAAGGCAATTGGTATTGCGATGGTTGTAGGCCAGTTGCTTTGGGATCTTCAAGTTCTCAAACTCAGGAAGGTGTGGCTGATTCAAGGGCAGCAACAGGTCAGAGCCTACCTGGTAGACCATCGCCTGCTGTACATGCAAGAGAAACTATTGACCTCAACTTGATGTCTTCACCGCGTCAAGGATTTGGGAATTTTTCTTCAAGATTTTCTGGTAGAAGTGTTGAAGGAGCTTCTCCAGTGTCTGGAGGAGGGGCACCAACTTTATCTGAGAGACGTTGGATACACCGTCAAATTCAACAGTTGCTTTCATTGGATAGAATGACTTCTGCTGTCGGTCGGTCTAATGGCATATCAGCTACTAATTCAACTAGTAACCTATATGGCTCTCAAAATGATCGAAGTAGGCTAACAACGACTCAAGACGCAAGGACGCAGAACGTGGGAACATCGTCATATCACTCATTTTTTGAGGAAAGATTATGCAACAGTACCTCTCCACTGATACAGAATGGGGATCATTTCTCTATGAGAATAAGCAATTCAAGAAGGCCAGTAGTTCAAGATTCAGCTCCATTCACCAACAGAGCTGTGAACGGGGCATTTTGGCCTGGTCTTGTGGGGACACCTCCTGTATCAGATTATGTACAAGTCCATCAGCTTAGCAGCAGTTCACACATTGTTGCTGATGGAAGTGTGTCCCCTGCTATTAGAGAAGATGGTAACTTTCACATAGTAAAGGAACAATTGTCATCACTGGTTAAACGCCACCTTATGGGCTTGTCACAAAATATTGATTTGGGCAACAGTACCATCAAGGACATTGCAAGGATTTCTCTGAACACCGTACTAGCAGCTTGTGGTCTTGAGCACAAGAAGAGCGAGGTTTGCGCGGTGCCCCCTCCTTCAGCCTGTCCTCACATTGAACTAATGGCTGGTGGGCAAACGAGTCTTATTAAAGGTTGCTGCTCATCCTGCTTCGATTCTTTTGTAGGAGATGTGGTTAAGAGGATCATGGACACAAGAATGTCGCAGTGGTTGCGACTAGGCCTTTAG 2616 0.4316 MRTPFERSHNNSSMYELNPLFLRLLLCSFFPSKDSHLNSIFSQMVRGGKVGGKRNFRKRVRSKQGDSDDSDEDYVVPDEDRELSDCSEDSLSSLDGCESEEGFDSFVEDEEEEGIEVRREFSRPKTKNGICGRQKIGRKPSQQRGRITYTHQLEEEEYKEEEQQEKEEEGDEETDEYEEDDADQDSDCDEDEEFTPEEEDYSDEEEIKVRKKRSNGIKMGKKAVQKRASVTYTRGCKRRNSRTARKPLRKKRRKNGGLRRKTKYDDEGGFIDNGSTIRTKSKKNPGRKRRRQIVDSDSYSDRVSSRSSDYEYTISEEEREQVREAEQLCGRLKTNLRSSSLLTKNEEDVVHEELHQQRKPPARKGKEKIEEHQGRKGKDKVEDLKSKPVKQVCGICLSEEDKRRVRGVLDCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTAGVDLRGSVIQVPKRDQVYQPSEEELRSYIDPYEYVFCSECHQGGDDDLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQTQEGVADSRAATGQSLPGRPSPAVHARETIDLNLMSSPRQGFGNFSSRFSGRSVEGASPVSGGGAPTLSERRWIHRQIQQLLSLDRMTSAVGRSNGISATNSTSNLYGSQNDRSRLTTTQDARTQNVGTSSYHSFFEERLCNSTSPLIQNGDHFSMRISNSRRPVVQDSAPFTNRAVNGAFWPGLVGTPPVSDYVQVHQLSSSSHIVADGSVSPAIREDGNFHIVKEQLSSLVKRHLMGLSQNIDLGNSTIKDIARISLNTVLAACGLEHKKSEVCAVPPPSACPHIELMAGGQTSLIKGCCSSCFDSFVGDVVKRIMDTRMSQWLRLGL 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0259 871 CDD RING-HC_Topors 391 438 - -
Alju01g0259 871 MobiDBLite consensus disorder prediction 101 115 - -
Alju01g0259 871 ProSiteProfiles Zinc finger RING-type profile. 393 435 IPR001841 -
Alju01g0259 871 Coils Coil 315 335 - -
Alju01g0259 871 MobiDBLite consensus disorder prediction 58 318 - -
Alju01g0259 871 MobiDBLite consensus disorder prediction 589 609 - -
Alju01g0259 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 453 IPR013083 -
Alju01g0259 871 SUPERFAMILY RING/U-box 392 441 - -
Alju01g0259 871 Coils Coil 151 171 - -
Alju01g0259 871 SMART PHD_3 486 531 IPR001965 -
Alju01g0259 871 PANTHER F18C1.6 PROTEIN 44 862 - -
Alju01g0259 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 458 534 IPR013083 -
Alju01g0259 871 SMART ring_2 393 434 IPR001841 -
Alju01g0259 871 MobiDBLite consensus disorder prediction 238 258 - -
Alju01g0259 871 MobiDBLite consensus disorder prediction 541 564 - -
Alju01g0259 871 MobiDBLite consensus disorder prediction 71 85 - -
Alju01g0259 871 ProSiteProfiles Zinc finger PHD-type profile. 484 533 IPR019787 -
Alju01g0259 871 Pfam PHD-finger 486 532 IPR019787 -
Alju01g0259 871 SUPERFAMILY FYVE/PHD zinc finger 456 532 IPR011011 -
Alju01g0259 871 ProSitePatterns Zinc finger RING-type signature. 412 421 IPR017907 -
Alju01g0259 871 Pfam Ring finger domain 392 435 IPR001841 -
Alju01g0259 871 MobiDBLite consensus disorder prediction 634 661 - -
Alju01g0259 871 MobiDBLite consensus disorder prediction 350 381 - -
Alju01g0259 871 MobiDBLite consensus disorder prediction 158 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0259 Alju-ChrAlju01 2028812 2032526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0259 481 530 C2H2 Transcription Factor Family AT3G01460 48.077 1.25e-08 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju01g0259 PHD 4.9e-09 CL0390