Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0223 ATGAGTCGCCGGTCCAGTCGCACTATCTATGTTGGCAATCTTCCCGGTGATATTCGCTTGAGAGAAGTAGAGGATCTTTTTTACAAGTATGGTCCCATTGTTGACATTGATTTAAAAATCCCTCCAAGACCACCTGGTTATGCTTTTGTCGAGTTTGAAGATCCTCGTGATGCTGAAGATGCAATTCATTATCGAGATGGATACAATTTTGATGGTTTTCGTTTGCGGGTCGAACTTGCACATGGGGGGCGGGGATCCTCATCAGACCGCTACAGTAGCTACAGTTCTAGAGGTGGTAGTAATGGAGTTTCCAGGCGCTCTGACTATCGCGTTATGGTCACTGGATTACCTACTTCGGCTTCTTGGCAAGACTTGAAGGATCACATGCGTAGAGCTGGTGATGTGTGTTTCTCTCAAGTCTTCCGTGAACGTGGTGGCATGACTGGGATAGTGGATTATACAAACTATGAAGATATGAAATATGCTATTAGGAAGCTTGATGACTCAGAATTTCGCAATGCCTTCTCTCGTGCATATATACAGGTGAGGGAATATGATCGGCGGAGTTATTCTAGGAGTCCTAGCCGTGATTCAAGGAGAAGCTATTCTAGAAGTCGTAGCCGCAGTCCTTACATGATTCGAAGTCCCAGCTACAGTGACAGGAGCCGAAGCTTGTCTCCAAAGGTAAAACGTTCACAGCGATCATTATCAAGATGTGGAATTTTGCAGCGACCTGGGGACTGCATGTTAGGATCTTGA 759 0.4559 MSRRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDAEDAIHYRDGYNFDGFRLRVELAHGGRGSSSDRYSSYSSRGGSNGVSRRSDYRVMVTGLPTSASWQDLKDHMRRAGDVCFSQVFRERGGMTGIVDYTNYEDMKYAIRKLDDSEFRNAFSRAYIQVREYDRRSYSRSPSRDSRRSYSRSRSRSPYMIRSPSYSDRSRSLSPKVKRSQRSLSRCGILQRPGDCMLGS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0223 252 MobiDBLite consensus disorder prediction 186 237 - -
Alju01g0223 252 SUPERFAMILY RNA-binding domain, RBD 5 175 IPR035979 GO:0003676
Alju01g0223 252 Gene3D - 2 108 IPR012677 -
Alju01g0223 252 MobiDBLite consensus disorder prediction 86 103 - -
Alju01g0223 252 CDD RRM2_SF2_plant_like 109 184 - -
Alju01g0223 252 FunFam serine/arginine-rich splicing factor SR34A-like 109 186 - -
Alju01g0223 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Alju01g0223 252 SMART rrm1_1 8 78 IPR000504 GO:0003723
Alju01g0223 252 SMART rrm1_1 110 179 IPR000504 GO:0003723
Alju01g0223 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Alju01g0223 252 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 234 - -
Alju01g0223 252 MobiDBLite consensus disorder prediction 82 105 - -
Alju01g0223 252 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 108 - -
Alju01g0223 252 CDD RRM1_SF2_plant_like 8 79 - -
Alju01g0223 252 Gene3D - 109 186 IPR012677 -
Alju01g0223 252 MobiDBLite consensus disorder prediction 205 237 - -
Alju01g0223 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 173 IPR000504 GO:0003723
Alju01g0223 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Alju01g0223 252 MobiDBLite consensus disorder prediction 186 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0223 Alju-ChrAlju01 1787153 1791008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0223 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.099 2.52e-06 45.8