Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0197 ATGCCCCTCGCGCCTCATCGTGTTCGGACGAATTCGGTGACCAGACGCGGAGCTCGTAATCTTCACCGTCGTGCGTCGTCGTGGGAGAGGGAATCTCCATGGTTTGAAAAATCGACGGCAGACTCGCAGGGTGATTCGAAAATGTTCAGCGTTCGGATTGTGTCCATCGACTACTACATGGCACCGCCGATTCCAGGCCTGGATGTCTGTTACAGCAGTTTCCATGGTGGGAAGGTGAACGAGGTTCCAGTTATAAGAATATATGGTTCTACTCCAGCAGGGCAGAAAACTTGTTTGCATATACATCGGGCTTTGCCCTACATGTATGTGCCATGTGCTGATATACACCTTAAGTCAGATCAAGAAGATGTGTACACATATAAGGTATCTGCATCTCTTGAGAAGGCATTGGAGCTAAAAGGAAGCAGTGGTTTGACGAGACAACATGTACATGGCTGCAGCCTTGTAAGAGCAAGGAGATTTTATGGCTATCATTCATCAGAGGAGTTATTTGTGAAGATATACCTATATTATCCGCAAGATGTCTCCCGTGCCGCTAATCTACTATTGGCTGGTGCTGTTCTTGGCAAAAGCTTACAGCCCCATGAATCACATATTCCCTTCATTCTTCAGTTTCTGGTTGATTATAACTTGTATGGCATGGGTCATCTGCACTTGTTAAAGATGAAGTTCCGCCATCCTATGCCAGATTCTTCTCACAAAAAATTGATTTTCAATGGTCAACAGACAGGGGTTGATACAGATGGTGATGCGTGTTTAGGGTCAGCAGTGTGGACATCATCGACGGTCTCATCTGATTGGATGTGGCAACTTCCTTGTGAATTGGATGCTTCATCAAATCATGAGGCTTATTGCCCTAAACGTCAAAGCACATGTGAACTGGAGGGCGATGCTTCTGTAGATGAGATTCTTAATCAGAAGTTCAAAATTTATTCATCCCTCTCACAAACGCGATCAGATGTGCAAATGGTTCAGTCTCTTGTACCAATCTGGAAGGAGCAGCAAGAAAGGACTGGGATTTATGAGGATACTATACCTCCTGATCCTGGGAAGCCACTGCCAGAAGCTGTTATGAGAAGTCTTTCTGCTGGTCTCGACTTTGAGAAAAAGTTTGTTGAACTGTGCTGTGAAGCTGAAACCTGTGCATCCTTTACTTCCTTTGAGGAGCTGAGAGAAACAGACATAATAGGTTCAGCATCACCACCGGCTTCAATATGCAAGGATGCCAAATTGCATGAAGAAGGGACAGAGGCAAATCTCAGATTGTTCACTGTTGATGAAACGCAAACAGCTGAGATTATTGGAACACAGGGCATAAAGGCGGCAGAAAAGGAAGCATTGAATCTCCTAAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATTAACTCAGATGATGAACTTATTCGTGAAACCATTTTGAGTCCCTTATTACCTGCTACAACAATTGATAAGGTGCTGGAGAAAGCTAATATAGATTACGAGAGTGAGTCCCAAAAGGAGTGTCAAGATATTCTTGATTCCATTGATGATCAATGTCAGTTGGAGTCATCAAAGAGAACGCCGCCTTTTTCCTCAAATTTTGATCATCCTGTTGAGTCTTCAAACAATTTGATTCCTCAAGTTGATGGTTCTGCTGATGATGAGTTTTCAAGTCCAAGTGCCAATTCAGCTGGAATTTCATTTTCACTGGACGAAAAAGGTGAATCCACAAGGTCTTCCAAATACCGTATACTGCAAAATACCAGAACAAATACTCATAGCAAAGGTAACAGGAACAAAGTATGGGGCTCTCTGCCATTTTCAATGTCCCATAACAGTTTTGAACATGCTAGCTTACATGTTGCTCACACATCTGAAAGGGAAACTGGAGAATCTGCTGACTTTGTTAATTTGGCCAGAAATGAGACAGAGAATAATGGCATAGATAATGGGGATCAAGGTGCTTCAAACTTAAAGGAAGTGCATATGCTGGATAATTGCTCTGTGCGGGACTTGATGAGAAGAAAGAGATGTTATCGAGTTGAGCAAACTGACCATGAATCTGAAATAACTAAAAAACTACTTTTTGATGCGGACGAGAAGCTGAAAACTGATGAAGGAGAAACAGAAGTCCAGAAGAGCTGTGTTCTGAAAATGAGCAATCATGATTTTGTGTGTAGGAAATCACCCCTCGTAGTTGGCAGTTGTACTGGACCGACTTTCTCTGAGCTGAAGAAGTTTCACCCTACTAGTTCTTTTGATCACTCAGCAGTTTCCAGTGGTAAAAAGTTTAAGGTTGACTCAACATGTGTACAAACTGACAAGTGTCAACGAATTGATATTGCAGCCTTAGGTAGTGTACAAAGCTCTTCTATTGAGAATTTAGGGTCTGGCAGTGATAATTGCATGTATAAATGTTCTCATGGAAGCAAATCTTATGAGCAACATGGTCAGACGGAGTCATGTGAGAATGCTGTAGGTGTGAATACTGCAACTGGCATTCAAGTATTGCAATGTGTAAAAAGTGATGAGGAAAAACCTAGAGAGAATTTGGGTTTTTGTGAGACTATTTGCACGGAACCCTTTGTCAATGACATGATGAGTAATCACATGAGATTAACCTCTGGCAGGACAGATGCCTTGGCAGTGAAAGCTCTGGACGATGTTATTCCTGCTTCTGCCGGTGGTTCCCGGAATGAGATGAAAACTTGGAACAAGCATGTTGCCAATAATGCCCCTGGTCCTGAAGGGAAAAAGGTCTTGGGTGTTGCAACTTATTACCAAAATGATGGCTCCCATCTATTTGTGTTGAAACCCAAAATTCTGCCTCCTTCTGCGGGTAGTGTTCAGAGATGGCTACTTTGTGATGAGAGAGATAAAATGTTTCAAGAAACTGATGCAAAGGAGACACATTTGCCTAAATGGAATACAAGACCTTGTCTTATGTCTAAACATGTCCATGATGTTGATTCTGTAAAGAAGACCCCATGCATCAGTGGTGGACAAATGAATCTAATCACAACATGCATGGATGGCTCACAAGATACTTCTCAAATATCAGGCCCTGATGTGAAATCAAGGTCTACTCCTCTAAGTCAAATTGGATTTCGTGATCCTGCAAGTACTGGCTGTGGACAGCAATTGACGTTACTCAGTATAGAGGTTCTTGCAGAATCAAGAGGAGAACTTTTACCTGATCCCCGGTTTGATGCCATCAACATTGTAGCTCTTGGTTTTCAAAATGATAGTGACACTATTGTTGATGTTCTTGTCCTTTTGCATTGTAAACTAGAACCTTGTCAAAGAAATTTTGGGGGTCTATCAGGCTGCAAGTTGTTGGTCTTCACGGAGGAAAAGTACTTGCTAAAAAAATTTATTAAGATTGTGTCTTCATCTGATCCAGATATTCTGATGGGCTGGGATATTCAAGGCGGTTCTCTTGGATTTTTAGCGGAAAGGGCTTCGCATCTTGGATTAGGATTGCTCTATAGTTTATCTCGTACTCCATCTGACATTTTGATTACTTCTGATGATGCTGAAACTTCTGAAAAAGATATGTCAGAAACTACCATTCCTGATATATCTAGTGCAGATGATGTACAAGAAAGTTCAATAATTGAGGATGAATGGGGACGTACACATGCCAGTGGAGTTCATGTTGGTGGCAGAATTGTTCTTAATGTGTGGCGACTTATCCGTGCAGAAGTTAAGCTCAATTTATACTCAGTTGAAGCTGTAGCTGAAGCTGTATTGAGGAGGAAAGTTCCTTCAATTCACAACAAGGTTCTGACCAAATGGTTTTCTGGTGGTCCTGGACGAGCAAGATATCGGTGTGTTGAATATATTACCGAGAGAGCAAAGCTGAATCTTGAGATATTAAGCCAACTTGATATGGTAAATCGAACATCAGAACTTGCTCGCATTTTTGGTATAGATTTTTTTTCTGTTCTCTCCAGAGGTTCCCAATATCGTGTTGAATCAATGTTTCTGAGGTTGGCACATACGCAAAACTATCTTGCCATCTCTCCTGGGAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTACCCCTTGTGATGGAACCAGAGTCAGGATTTTATTCAGACCCGGTTGTTGTATTTGACTTTCAGTCATTATATCCATCCATGATAATTGCTTACAACCTTTGCTTTTGTACGTGCCTTGGCAAAGTTGTGGCATCAAAAGCAAACACGCTCGGGGTTAGTTCATTTTCACCAGAGCAGCATGTTATGCAGGATTTAAAAGATCAGATCTTGCTTACTCCAAATGGTGTTATGTTTGTTCCTTCCAAGGTTCGTCGAGGTATACTACCACTCTTGTTGGAAGAAATTTTATCAACCAGGATAATGGTGAAACAAGCAATGAAAAAGTTGGCTCCTTCACAGCAAGTCCTTCAGCGGATATTTAACGCAAGACAGCTTGCTTTGAAGCTTATTTCAAATGTGACATATGGCTACACTGCTGCTGGATTTAGTGGTCGTATGCCTTGCGCAGAGCTTGCAGACAGTATTGTTCAATGTGGCCGTTGCACGCTGGAAAGGGCAATATCATTTGTAAATCAACACGATAAGTGGAATGCAAAAGTCATTTATGGAGATACTGATAGCATGTTTGTTCTCCTGAAAGGACGCACCATTAAAGAATGTTTTCAAATTGGGAGTGAGATTGCTTCTGCTGTCACTGCTATGAACCCAAGTCCTGTCACCCTGAAGTTGGAGAAAGTTTATCAGCCTTGTTTCCTCCTTACTAAGAAGCGGTACGTTGGTTATAGTTATGAAAGCCCTGATCAAGTTGAGCCAGTTTTTGATGCTAAAGGAATTGAGACTGTTCGTAGAGACACATGTGGTGCAGTTGCAAAGATAATGGAACAGTCTTTGAGGCTCTTTTTTGAAACTCAGGATTTGTCGGAGGTGAAAAGTTATTTACAACGTCAGTGGAAGAGAATTCTTTCAGGCAAAGCCTCCATTAAAGATTTTGTCTTTGCTAAGGAGGTTCGCCTAGGTAGCTATAGTGCCAGGACATCATCATCTTTACCTCCAGCTGCAATTGTTGCCACCAAGGCAATGAGGTTTGACCCTAGGGCAGAACCACGTTATGCTGAGAGAGTACCTTATGTTGTAATCCATGGAGAGCCTGGAGCACGCCTGGTTGACATGGTTGTGGATCCATTGGAAGTTTTGGCACTTGATTCCCCATTCAGAATAAATGACTTGTATTACATTAATAAACAAATAATACCTGCTTTGCAGCGGGTGCTTGGGCTTGTTGGTGCTGACCTGAACCAATGGTTCTTAGAGGTGCCCCGTCCTTTAAAGGAAGCCCGTGTAAAGCATCTCATTGCACCAAATGCACATCGAATGAGAATTGACTCGTATTATCTGTCAAAGCATTGTATACTGTGTGGCGGATTGGTTCAAGCATCTGCACATATATGCATTCAGTGTTCTGAAAATGGAGTGGCTGCTGCAACGGCTGTGATTAGTAAAACATCAAATTTGGAACAAGAGATGCAGCATCTTGTTGCTATATGTGATCATTGTGGAGGTGGAGACAGGCTTCTGGAAAGTGATGTAAAGTGCACATCAATTTCATGCTCGGTGTTTTATGAGAGACGAAAAGTTCAGAAGGAACTACTAGCTATGAACCATGTTGCTGCTGGTGAAGGCTTCTATCCAAAATGCATGGTCGAGTGGTTCTGA 5727 0.422 MPLAPHRVRTNSVTRRGARNLHRRASSWERESPWFEKSTADSQGDSKMFSVRIVSIDYYMAPPIPGLDVCYSSFHGGKVNEVPVIRIYGSTPAGQKTCLHIHRALPYMYVPCADIHLKSDQEDVYTYKVSASLEKALELKGSSGLTRQHVHGCSLVRARRFYGYHSSEELFVKIYLYYPQDVSRAANLLLAGAVLGKSLQPHESHIPFILQFLVDYNLYGMGHLHLLKMKFRHPMPDSSHKKLIFNGQQTGVDTDGDACLGSAVWTSSTVSSDWMWQLPCELDASSNHEAYCPKRQSTCELEGDASVDEILNQKFKIYSSLSQTRSDVQMVQSLVPIWKEQQERTGIYEDTIPPDPGKPLPEAVMRSLSAGLDFEKKFVELCCEAETCASFTSFEELRETDIIGSASPPASICKDAKLHEEGTEANLRLFTVDETQTAEIIGTQGIKAAEKEALNLLKWLATSQAAEDINSDDELIRETILSPLLPATTIDKVLEKANIDYESESQKECQDILDSIDDQCQLESSKRTPPFSSNFDHPVESSNNLIPQVDGSADDEFSSPSANSAGISFSLDEKGESTRSSKYRILQNTRTNTHSKGNRNKVWGSLPFSMSHNSFEHASLHVAHTSERETGESADFVNLARNETENNGIDNGDQGASNLKEVHMLDNCSVRDLMRRKRCYRVEQTDHESEITKKLLFDADEKLKTDEGETEVQKSCVLKMSNHDFVCRKSPLVVGSCTGPTFSELKKFHPTSSFDHSAVSSGKKFKVDSTCVQTDKCQRIDIAALGSVQSSSIENLGSGSDNCMYKCSHGSKSYEQHGQTESCENAVGVNTATGIQVLQCVKSDEEKPRENLGFCETICTEPFVNDMMSNHMRLTSGRTDALAVKALDDVIPASAGGSRNEMKTWNKHVANNAPGPEGKKVLGVATYYQNDGSHLFVLKPKILPPSAGSVQRWLLCDERDKMFQETDAKETHLPKWNTRPCLMSKHVHDVDSVKKTPCISGGQMNLITTCMDGSQDTSQISGPDVKSRSTPLSQIGFRDPASTGCGQQLTLLSIEVLAESRGELLPDPRFDAINIVALGFQNDSDTIVDVLVLLHCKLEPCQRNFGGLSGCKLLVFTEEKYLLKKFIKIVSSSDPDILMGWDIQGGSLGFLAERASHLGLGLLYSLSRTPSDILITSDDAETSEKDMSETTIPDISSADDVQESSIIEDEWGRTHASGVHVGGRIVLNVWRLIRAEVKLNLYSVEAVAEAVLRRKVPSIHNKVLTKWFSGGPGRARYRCVEYITERAKLNLEILSQLDMVNRTSELARIFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVMQDLKDQILLTPNGVMFVPSKVRRGILPLLLEEILSTRIMVKQAMKKLAPSQQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLERAISFVNQHDKWNAKVIYGDTDSMFVLLKGRTIKECFQIGSEIASAVTAMNPSPVTLKLEKVYQPCFLLTKKRYVGYSYESPDQVEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFETQDLSEVKSYLQRQWKRILSGKASIKDFVFAKEVRLGSYSARTSSSLPPAAIVATKAMRFDPRAEPRYAERVPYVVIHGEPGARLVDMVVDPLEVLALDSPFRINDLYYINKQIIPALQRVLGLVGADLNQWFLEVPRPLKEARVKHLIAPNAHRMRIDSYYLSKHCILCGGLVQASAHICIQCSENGVAAATAVISKTSNLEQEMQHLVAICDHCGGGDRLLESDVKCTSISCSVFYERRKVQKELLAMNHVAAGEGFYPKCMVEWF 1908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0197 1908 Gene3D DNA Polymerase, chain B, domain 1 67 234 - -
Alju01g0197 1908 FunFam DNA polymerase zeta 1440 1499 - -
Alju01g0197 1908 Gene3D Helix hairpin bin 1439 1499 - -
Alju01g0197 1908 MobiDBLite consensus disorder prediction 523 568 - -
Alju01g0197 1908 SUPERFAMILY Ribonuclease H-like 74 1320 IPR012337 -
Alju01g0197 1908 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 45 1900 IPR030559 GO:0006281|GO:0016035|GO:0019985
Alju01g0197 1908 MobiDBLite consensus disorder prediction 1 24 - -
Alju01g0197 1908 Pfam DNA polymerase family B 1314 1762 IPR006134 GO:0000166|GO:0003677
Alju01g0197 1908 Gene3D - 1615 1778 IPR042087 -
Alju01g0197 1908 CDD POLBc_zeta 1321 1770 - -
Alju01g0197 1908 CDD DNA_polB_zeta_exo 1046 1295 - -
Alju01g0197 1908 PRINTS DNA-directed DNA-polymerase family B signature 1373 1386 IPR006172 GO:0000166|GO:0003676|GO:0003887
Alju01g0197 1908 PRINTS DNA-directed DNA-polymerase family B signature 1482 1494 IPR006172 GO:0000166|GO:0003676|GO:0003887
Alju01g0197 1908 PRINTS DNA-directed DNA-polymerase family B signature 1538 1546 IPR006172 GO:0000166|GO:0003676|GO:0003887
Alju01g0197 1908 ProSitePatterns DNA polymerase family B signature. 1540 1548 IPR017964 GO:0000166|GO:0003676
Alju01g0197 1908 SMART polmehr3 1047 1552 IPR006172 GO:0000166|GO:0003676|GO:0003887
Alju01g0197 1908 Pfam DNA polymerase family B, exonuclease domain 1048 1198 IPR006133 -
Alju01g0197 1908 FunFam DNA polymerase 68 233 - -
Alju01g0197 1908 Gene3D Palm domain of DNA polymerase 1359 1604 IPR023211 -
Alju01g0197 1908 Pfam C4-type zinc-finger of DNA polymerase delta 1807 1880 IPR025687 -
Alju01g0197 1908 FunFam DNA polymerase 1056 1356 - -
Alju01g0197 1908 SUPERFAMILY DNA/RNA polymerases 1360 1773 IPR043502 -
Alju01g0197 1908 Gene3D - 1080 1356 IPR036397 GO:0003676
Alju01g0197 1908 FunFam DNA polymerase 1615 1784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0197 Alju-ChrAlju01 1536492 1551691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0197 77 246 Core DNA Replication Machinery Family AT5G63960 25.143 3.83e-09 60.1