Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0187 ATGGGGGTTGATGGCAGTGGAGCTCAGTTGCCTTATAGTTCTAATCCTTATCAACCGACGCAAATATCTGATAGCGCAAACACATCTATGGCTGTTGGTGGCATTGGAGCTCAGCCAAGCCAAATATCTGATAGCACAAACACATCTATGGCTGTTGGTGACATTGGAGCTCAGCTGCATTATGGTTCTAACCCTTACCAGCCAAGCCAAATATCTGATAGCGCAAACACATCTATGGGTGTTGGTGGCATTGGAGCTCAGCTGCATTATGGTTCTAACCCTTACCAGCCAAGCCAAATATCAGATAGCTCAAGCACATCTATGGGTGCCGGTGGCATTGGAGCTCAGGTGCATTATGGTTCTAACCCTTACCAGCCAAGGCAAATATCTGATAGCGCAAACACATCTATGGGGGTTGGCGGCAGTGGAGCTCAGTTGCATTATGGTTCTAACCCTTACCAGCCAAGGCAAATATCTGATAGCGCAAACCCATCTATGGGTGTTGGTCGCAGTGGAGCTCATTCGCCTTGTGGTTCTAATCCTTACCGGCCAAGGCAAATATCTTATAGCGCAAACCCATCTATGGGGGTCGGTGGCAGTGAATCTCAGGTGCCTTGTGGTTCTAATCCTAATTACCAGCCAAGCCAAATATCTTATAGCGCAAACCCATCTATGGAGGGTGGTGGCAGTGAAGCTCAGTTGCCTTATGTTTCTAATCCTTACCAGCCAAGTCAAATATCTGGGGCATCTGATTCTGTCGTTGCATCTTCTGGGGCCATTCAAACCACTAGCCAGCCTGCGGGAGGTAATCAGCAACTCAAAACCTTTGGGAAAAATCAATACCAAGAAATTGACAGGGTAACTGATTTCAAGAACCTGGAGGGTGGGATCAGGAAGCTTATGAAAGCCGATAAAGATGTCAAGACAATATCAGATGAGGCACCTATTATATTTGCAAGGGCGTGTGAAATGTTCATATCAGATTTGACCTTGCGTTCTTGGAACCACACTGAGAAAAAGAAAAGGAAAACACTGCAAAAAGATGATATCGCAGCAGCAATCACAGAGACTGACTTCGATTTTTTGGTTGATAGTGAGCCCCAGGAGGACTTGAAAGATGAACTACTTGCATCAATCCCTAGAGGAACCATGCCAGTTGCAGGTCCTGTCGATGATTTTCCTTTTAGGTTTATTTCAGCACAGCATGCTCCTCAAGTTGGCGCTACCGGGGTCATTATGGATTCAGACGCATCAATCCCTAGAGGAACCATGCCAGTTGCAGATCCTGATGATGATTTTCCTTTTACGCATCTTTCAAATTCACCACAGTATGCTCCTCAAGTTGGAGCTAGCGGGGCCATCATGGGTAGGCCTATAGAACGATGGAGAGGAGAGTGGAGGAAAGCATACACGATAGCGCCGGTGGAATACTGCCGATACTGGAAAGGCGATAGTCATGGAGGGGAGAAAGATTGTTGACTAAACACGAAGGAAGCCTTGTCGATGTCAAGAGGCCTCAAGTTGGTTTCTCCTTTTGGGACGTTTTTCTTTCGCGCAACAGAGAGTCACCCAGTGATTGATGAAGGCGTGACGCTGATGAAGAGACAAATTAATGAGGATAGCCGTAAGGCTTTGGAGGTGTGGATCCCTGTGAAGGTATGGATCTATGATGTTGATACTGGCGAAACTTACGAGGCAAAGATGGCGAAGAAAGAGTGGTTCTGGTTTGATCCTATGCCGTGCGAGGAGAAGAGACCTGAAATATGGTCAAGAAATTGGACTTCGGGTCTCCCTCAACAATCACGCGGCGGAGGGCTTGGAATTGTCAGTCCTCTTCTCCCCATTCTTGGATATCCATTGCTTTCGACTCTGGAACATGATTCAGTGGTTGTTATAGGATGTAACTGAATAGCCCAGGGGTGCATGGGCTACAGACCCATACAAATCCAAATAACACACAGGCTGCTGGCCCACTACAACTCAAGAATCAACTCCCAAATTCTCAATCTCAAACTCCACCCGCCAACCGCCGTCTTACACTACACCCTCCAATTAGCCTCCTCGCATTTAATATTCATGGCCCAAATAGTCACTCCACTCCCTGAAATTCGCGTGGGATTCTCATCCTTTCTAGTTTCAACCTCGACAAATTCTGAAATTTCGTTTTTGTTTCCCTTGCCTCCCTTCAAAAATGGACGTCTTGTTTATCGTACCGGACACCCCCTTTCTTAA 2232 0.4668 MGVDGSGAQLPYSSNPYQPTQISDSANTSMAVGGIGAQPSQISDSTNTSMAVGDIGAQLHYGSNPYQPSQISDSANTSMGVGGIGAQLHYGSNPYQPSQISDSSSTSMGAGGIGAQVHYGSNPYQPRQISDSANTSMGVGGSGAQLHYGSNPYQPRQISDSANPSMGVGRSGAHSPCGSNPYRPRQISYSANPSMGVGGSESQVPCGSNPNYQPSQISYSANPSMEGGGSEAQLPYVSNPYQPSQISGASDSVVASSGAIQTTSQPAGGNQQLKTFGKNQYQEIDRVTDFKNLEGGIRKLMKADKDVKTISDEAPIIFARACEMFISDLTLRSWNHTEKKKRKTLQKDDIAAAITETDFDFLVDSEPQEDLKDELLASIPRGTMPVAGPVDDFPFRFISAQHAPQVGATGVIMDSDASIPRGTMPVADPDDDFPFTHLSNSPQYAPQVGASGAIMGRPIERWRGEWRKAYTIAPVEYCRYWKGDSHGGEKDCXLNTKEALSMSRGLKLVSPFGTFFFRATESHPVIDEGVTLMKRQINEDSRKALEVWIPVKVWIYDVDTGETYEAKMAKKEWFWFDPMPCEEKRPEIWSRNWTSGLPQQSRGGGLGIVSPLLPILGYPLLSTLEHDSVVVIGCNXIAQGCMGYRPIQIQITHRLLAHYNSRINSQILNLKLHPPTAVLHYTLQLASSHLIFMAQIVTPLPEIRVGFSSFLVSTSTNSEISFLFPLPPFKNGRLVYRTGHPLS 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0187 743 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 296 354 IPR003958 -
Alju01g0187 743 MobiDBLite consensus disorder prediction 91 111 - -
Alju01g0187 743 Gene3D Histone, subunit A 261 367 IPR009072 GO:0046982
Alju01g0187 743 MobiDBLite consensus disorder prediction 8 53 - -
Alju01g0187 743 MobiDBLite consensus disorder prediction 235 252 - -
Alju01g0187 743 MobiDBLite consensus disorder prediction 181 227 - -
Alju01g0187 743 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 265 374 - -
Alju01g0187 743 MobiDBLite consensus disorder prediction 62 81 - -
Alju01g0187 743 MobiDBLite consensus disorder prediction 257 276 - -
Alju01g0187 743 SUPERFAMILY Histone-fold 266 360 IPR009072 GO:0046982
Alju01g0187 743 MobiDBLite consensus disorder prediction 1 252 - -
Alju01g0187 743 MobiDBLite consensus disorder prediction 121 168 - -
Alju01g0187 743 MobiDBLite consensus disorder prediction 420 440 - -
Alju01g0187 743 FunFam Nuclear transcription factor Y subunit C 260 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0187 Alju-ChrAlju01 1417026 1424583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0187 276 413 CCAAT-HAP5 Transcription Factor Family AT1G08970 59.155 1.25e-48 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Alju01g0187 CBFD_NFYB_HMF 1.2e-14 CL0012