Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju01g0177 | ATGATCAAGCTCATCTCTCTCCATCATGGAGCCTTTCTCCTCTTCCCCCTCCTCGTCGCTGCTCAACCATCTTCCGATTCTAACAACGACCCAACCCAACAACAGCTCAATAGCCTCACCCCTTCCATGGCCATCATCATCGTCATCCTGATTGCCGCTCTTTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCGCCGACTCCCCCTCCGGCAGCGTCCGTCCCCTCGGCCTCCGTGCTTCCATCGGCCGTTCCCGCCGTGCTCCTCGCGGTCTCGACCCTCTCGTCATCCACACCTTCCCCACTCTTCACTATTCCGAGGTCAAGTCCCACAAGATCGGCAAAGATGCCCTCGAGTGCGCCGTCTGCTTGTCCGAGTTCGAAGACTCCGAAACGCTGCGTTTGATCCCCAAGTGCGATCACGTTTTCCACCCTGAGTGCATCGACGAGTGGTTGGCTACTCACACCACCTGCCCCGTCTGCCGAGCCGACCTCGTTCCTCAGCCTGACCAGTCAGTCCGCGGAGTGCCGATCGTCAACGCCGACGCCGTGGACCTTGAAGCTCAGAACGAGGTCGTGGAGCCCGAACCCCGGCAGCAGCATTCTGTGGAGGCCGATCCAGAACCGACGGAGTCCGAAGTTGTGTGCCTCAATCAGACGGTAAAACGGAACCGCACAACGCGAGGGTCTCGATCGGGTCGGGCGCGGAGGTTTCCCCGGTCGCACTCGACGGGGCATTCCTTGGTCCAGCCGGGTGAAGACACAGAACGTTTCACTCTGAGATTGCCCGTGGAAGTGAGGAATCAGATATTGAACAGGGAGTTGCATCGGGCGACAAGCCTGGTCGTCTTGCCCAGAGAAGGTAGTTCGAGACGAGGATATCGAATTAGTGGGGATGGCAGTAGCAGAGGGAGACACTCGAGGAGGCTGGATCGTGGTATTAAATCGGACCGATGGGTTTTCACGATGGCGCCGCCGTTCCTTGTGAGGGCATCGTCTATGAGGTCGCCGAAAGTGGGAGGGAGCGTCCGTGAAGGAACCTCCGCTCAAATCGTCGTGCCGGCGGCTGCGGATGCGGACCGGCCTGCGGTTTAA | 1101 | 0.5931 | MIKLISLHHGAFLLFPLLVAAQPSSDSNNDPTQQQLNSLTPSMAIIIVILIAALFLMGFFSIYIRHCADSPSGSVRPLGLRASIGRSRRAPRGLDPLVIHTFPTLHYSEVKSHKIGKDALECAVCLSEFEDSETLRLIPKCDHVFHPECIDEWLATHTTCPVCRADLVPQPDQSVRGVPIVNADAVDLEAQNEVVEPEPRQQHSVEADPEPTESEVVCLNQTVKRNRTTRGSRSGRARRFPRSHSTGHSLVQPGEDTERFTLRLPVEVRNQILNRELHRATSLVVLPREGSSRRGYRISGDGSSRGRHSRRLDRGIKSDRWVFTMAPPFLVRASSMRSPKVGGSVREGTSAQIVVPAAADADRPAV | 366 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju01g0177 | 366 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 169 | IPR013083 | - | |
| Alju01g0177 | 366 | MobiDBLite | consensus disorder prediction | 227 | 256 | - | - | |
| Alju01g0177 | 366 | MobiDBLite | consensus disorder prediction | 292 | 312 | - | - | |
| Alju01g0177 | 366 | ProSiteProfiles | Zinc finger RING-type profile. | 122 | 164 | IPR001841 | - | |
| Alju01g0177 | 366 | SMART | ring_2 | 122 | 163 | IPR001841 | - | |
| Alju01g0177 | 366 | SUPERFAMILY | RING/U-box | 121 | 171 | - | - | |
| Alju01g0177 | 366 | CDD | RING-H2_EL5-like | 121 | 164 | - | - | |
| Alju01g0177 | 366 | MobiDBLite | consensus disorder prediction | 229 | 243 | - | - | |
| Alju01g0177 | 366 | PANTHER | RING FINGER DOMAIN-CONTAINING | 26 | 173 | - | - | |
| Alju01g0177 | 366 | MobiDBLite | consensus disorder prediction | 193 | 210 | - | - | |
| Alju01g0177 | 366 | MobiDBLite | consensus disorder prediction | 193 | 215 | - | - | |
| Alju01g0177 | 366 | FunFam | E3 ubiquitin-protein ligase ATL6 | 82 | 170 | - | - | |
| Alju01g0177 | 366 | Pfam | Ring finger domain | 121 | 164 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju01g0177 | Alju-ChrAlju01 | 1373037 | 1374137 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju01g0177 | 12 | 346 | Rapid Response to Elicitors | AT3G05200 | 49.412 | 1.12e-90 | 276 |