Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0097 ATGACCACTGCTGCTCAGCGTAAGCCCAAGAAATCCGCAGTAGCGAGTAAACCCAAATCCTCGCCTTCGCACCCTCCTTTCGCTGAGATGATCACTGATGCGATCGTGAATCTCAAGGAGAGGACCGGTTCAAGTCAGTATGCCATTACCAAGTTTATCGAGGACAAGCACAAACATTTGCCCCCCACTTTCAAGAAGCTTTTGCTGAACAATTTGAAGAAGTCGGTTGCCGCTGGTAAGCTCGTCAAAGTCAAGAACTCCTTCAAGCTTGCACCCAAAAAGCCGGCTCCTGCAGCTGCGAAGCCCCCGAAATCATCCGTCAAGGCCGTACCTAAGTCTCAGACGAAGCCCGCTACTAAGCCAAGAGTAGCTGCCAAGCCTAAAGCCGTTTCCAAACCTAAATCCAAGCCAACTGCTTCACGAAGTGCGAAAGCGACTTCGAAGCCGGCTAAGACATCGGCCAGGACCTCGCTGGGGAAGAGGGTAGCCAAGGCGGCGAAGAGTGTGAAGAAACCCAAGAGTGTGAAATCGCCAACCAAAAAGGAGGTTGTCAAGAAAACTAAGAAGTAG 570 0.5123 MTTAAQRKPKKSAVASKPKSSPSHPPFAEMITDAIVNLKERTGSSQYAITKFIEDKHKHLPPTFKKLLLNNLKKSVAAGKLVKVKNSFKLAPKKPAPAAAKPPKSSVKAVPKSQTKPATKPRVAAKPKAVSKPKSKPTASRSAKATSKPAKTSARTSLGKRVAKAAKSVKKPKSVKSPTKKEVVKKTKK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0097 189 PANTHER HISTONE H1 9 181 - -
Alju01g0097 189 Gene3D - 18 104 IPR036388 -
Alju01g0097 189 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 23 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju01g0097 189 MobiDBLite consensus disorder prediction 1 27 - -
Alju01g0097 189 Pfam linker histone H1 and H5 family 24 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju01g0097 189 PRINTS Histone H5 signature 155 172 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju01g0097 189 PRINTS Histone H5 signature 177 189 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju01g0097 189 PRINTS Histone H5 signature 116 130 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju01g0097 189 PRINTS Histone H5 signature 10 31 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju01g0097 189 PRINTS Histone H5 signature 37 54 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju01g0097 189 SUPERFAMILY "Winged helix" DNA-binding domain 20 104 IPR036390 -
Alju01g0097 189 MobiDBLite consensus disorder prediction 135 154 - -
Alju01g0097 189 CDD H15 21 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju01g0097 189 SMART h15plus2 21 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju01g0097 189 MobiDBLite consensus disorder prediction 90 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0097 Alju-ChrAlju01 844676 845339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0097 30 90 Single Myb Histone (SMH) Gene Family AT1G49950 44.262 2.18e-09 53.9