Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0081 ATGACCTCGGTTAAGATGGAGGGAAAGACCGAGGAAGTGGAAGATATTGGAAGTGCTTCAAGTGGTTCATTTATTGATGATTCAGATGATGGGTCTTCAACTTCTGAATTACATGGCAAAGCACATCCCGAGGAACCTTTGACTGAGGAAGAAATAGAAGGTCTGATTGCTGAGTTGTTAGAAGTTGAGGGCAAGGCTGCAGAGGCTCAAGAAGCTCTTGAGGAGGAGTCTCTTAACAAAGTAGAGATTGAGGTTAGGCGAGAATTGGAGCAAACTCTTCAGGGCGATGATTTGGAATCTGCTGTTGCAGATGAGATGATTACTTTAAAAGAAGAGTGGGAAGGTGTTCTGGATGAACTTGAGACTGAAAATGCCTACTTGCTGGAACAACTTGATATGGCTGGTGTTGAGCTGCCAAGGCTTTATAAGTGGATAGAAAGGGAGGCTCCTAATGGTTGTTTGACTGAAGCTTGGAAAAAGAGGAATCATTGGGTTGGTACTCAGGCAACTGAAGAATTGGCGGAGTCAGTTGCTGATGCTGAGAAGCATCTACAAGTCTGCAGACCTGTTAGAAGACGACATGGTAAACTGTTGGAAGAGGGTGCCAGTGGATTTCTTCAAAAAAAACTTGATAAATCCAGTGAACCAGTAAAGGAAAAAACTGAGGCAGATTGGGATATGTTTAACAAAATATTTCACGATGGTAGTGATGCTGATGCTTCATTTGGCAGTAAGAATTGGGCTTCTGTTTATTTGGCCAGCACACCGCAGCAAGCTGCACAGATGGGACTTGAATTTCCTGGTGTCAATGAGGTGGAGGAGATTGACGACATTGATGGCACTTTTGCTGATCCATTTATTGCAGCTGCAATTGCAAATGAAAAAGAGATAGAACTCTCTGATGAACAGAAAAGGAAATTTAAAAAGGTCAAAGAAGAAGAAGATGTAATTGTTGACCGGAAGCTTCAAATCCATTTAAAACGAAGGAGGTATCGAAAGAATAAAAAGCAGAGGGAAACTATAGAGAGTCTCAAACAGAAGTCTTCATCTGTTGATTGTTCTAATCCTGATATGGAGGAAGAAACTTGTGATGATGGCGAAAACGCGACTAACAATGAAGTTGGGTGTCTGAATATGAAGAATGATAACATTGAGGATCTGGGTGGAAATTATGACCTTGACCAAGTGAAGCCTATGAATATTGGCCCTTTGCCAGAGCTCTCTAAATCTTCATTACCTGATGTTGAACAGAGAGGTACCAAGCGACTAAATGATGATGAAGAGTGTAGTGATACAAAAAAGAGTCGGACTGTCATTAACAGTGGTGATGAAGCTGATGCGGTTGAAAATAATATAGTTAGGAATACAAATGCATTAGATGATCAGTCTGAGATGCAAGGCACCTGTACCAGCATTGCTGATAGTCTTCCTTCACAGCATCTGGATAAGAGATTTTGCTGCACTATTTGTGATAAAGTAGCACTTGAAATTCACGAACATCCTCTTTTGAAAGTGATTATTTGCAGGGATTGCATTTTTTTAATTGAAGAAAAGAAACATATGAAGGATCTCCATCCTGATTGCTCTGTGTGTTATTGTGCTTGGTGTGGAGGAAACAATGAATTAGTTAGCTGCAAGTCATGCAAAATGTTATTCTGCAACAATTGCATAAAGAAGAATCTTGGTACAGAACTCCTTTCTGAAGTTCAGGCCACTGGTTGGCTTTGTTATTGCTGTTGCCCAAATCTGTTGCAAAGACTCTCGTCACAACTAGAGAAAGCTATGGGATCTGTCGAAACATCAGTTTCCAGCTCTAGTAGCGATTCAGATAATTCACAGGCAGAGATTAATGTTACAATCAGTTCTAAGCGAAAGCGCAAAAAGAAGATTAGGAGGATCCTTGATGATGCTGAATTAGGAGAGGAAACAAAAAGGAAAATTGCAATAGAAAAGGAGCGTCAGGAACGTTTGGAGTCATTGCGAGTGCAGTTTTCTGCCTCATCTAACATCATGGACTCTTCTGGATATAACGGAAATTTATCTGAAGGTGGAAGTTCTGAAGTCCTTGGTGATGCATTAACAGGCTATGTTGTGAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGTCAGAATTCCTCCTAGTATATCAGCTAAACTGAAAGCGCATCAGATTGCAGGAATAAGATTTATGTGGGAGAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAGGGTCTTGGTTGTATTCTTGCTCATACGATGGGCCTTGGTAAAACCTTTCAGGTGATAGCTTTCTTGTACACAGCAATGAGAAGCACTGATCTGGGGTTAAGAACTGCACTTATTGTCACACCTGTCAATGTGCTGCACAATTGGCGGAAGGAGTTTATCAAATGGAGGCCATCAGAAGTAAAACATCTGAGGGTCTTCATGCTGGAAGATGTATCAAGGGATAGGAGGGCAGAAATACTTGCAAAATGGAGAAAAAAAGGTGGTATATTTCTGATTGGCTATACTGCTTTTCGAAATCTGTCTTTTGGAAAACATGTGAAAGATAGACACACAGCCCGAGAAATTTGCCGTGCTTTACAGGATGGACCAGACATACTTGTTTGTGATGAAGCTCATATGATAAAGAATATAAAGGCTGACATAACCCAAGCCTTGAAACAAGTAAAATGCCATAGAAGAATTGCACTGACTGGATCACCTCTTCAGAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGGAATCGCTTCCAGAATCCTATAGAGAATGGTCAACATACTAATTCTACGCTGGATGATGTGAAGATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAGGGCTTTGTTCAACGCATGGACATGAATGTGGCGAAGAAGGATTTGCCTCCAAAAACTGTCTTTGTTATAAGTGTCAAGCTTTCTCCCCTACAGAGAAAACTGTACAAGAGATTCCTTGATGTGCATGGATTCACAAATGACCGGGCTTCCAATGAAAAAATGAAAAAGAGATGTTTTTTTGTAGGGTACCAAGCATTAGCTCAGATATGGAACCATCCTGGGATCTTGCAATTGACAAAAGAAGAGAAGGACTATGTAAGACAAGAAGATGCAGTTGAGAATTTTCTTGTGGATGACAGCTCCAGTGACGAAAATTCTGATTTTAACGTGCCTGTTGGAGAGAAGGTTAGACGTGCAAATGAGTTTCTGCAAAGGAAAGACCAGAATGGCTTTTTTCTAAAGGGTTGGTGGAATGATCTTCTGCATGAAAAAAATTATAAAGAACTTGATTACAGTGGCAAAATGGTTTTGCTCCTAGACATACTAACCATGAGTTCTGATGTTGGTGACAAGGTGTTGGTTTTTAGCCAGAGCATACCAACACTAGACCTCATAGAACTTTATCTATCAAGATTACCTAGACGAGGCAAACATGGCAAACTTTGGAAGAAGGGAAAAGACTGGTATAGGCTGGATGGAAGGACAGAGAGCTCCGAAAGGCAGAAGCTGGTTGAGAGGTTTAATGAGCCTTCCAATAATAGAGTGAAGTGCTCTCTTATTTCGACCAGAGCTGGTTCTTTGGGCATTAATCTCCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCCATCTATCGAGCTTGGAGGTATGGCCAGAGAAAGCCTGTGTTTGCTTACCGATTACTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGAGTGGTTGACAGACAGCAAGTGTACAGGACTATATCTAAAGAAGAGATGTTACATCTCTTTGAGTTTGGTGATGATGAAAACCCTGAGACACTGGCTGAACTGAGCCAAGAGAATGGGCATTCAGTGGAGCAGACAGTACCACATTCAAATGGAACCAGCCATTCTGATAAGTTAATGGAAAGCTTACTTGGCAAACATCGTCCAAAGTGGATTGCCAATTATCATGAACACGAAACGTTATTGCAAGAGAATGAAGAAGAAAAGCTTTCAAAAGAGGAGCAGGATATGGCTTGGGAAGTATACCGGAAAACGTTAGAATGGGAGGAAGTGCAGAGAGTACCACTGGGGGAATCACTGCCTGTTCAAAAACCACCAGAGCCAAATGCAGCACCCCCTGCACCAAAGACCCGCAACCTCTCACCAACAAGGTTGAGGAACAGTTTTGTAACACGCAAATGCACCAACCTTTCACACTTGCTGACGCTTAGAAGTCAAGGCACTAAATTTGGTTGCAGTACAGTCTGTGGGGAATGCGCCCAAGAGATCAGATGGGAGGACTTGAAGAACAGAGATGGAAGAGCAGCAAGGTGA 4434 0.4138 MTSVKMEGKTEEVEDIGSASSGSFIDDSDDGSSTSELHGKAHPEEPLTEEEIEGLIAELLEVEGKAAEAQEALEEESLNKVEIEVRRELEQTLQGDDLESAVADEMITLKEEWEGVLDELETENAYLLEQLDMAGVELPRLYKWIEREAPNGCLTEAWKKRNHWVGTQATEELAESVADAEKHLQVCRPVRRRHGKLLEEGASGFLQKKLDKSSEPVKEKTEADWDMFNKIFHDGSDADASFGSKNWASVYLASTPQQAAQMGLEFPGVNEVEEIDDIDGTFADPFIAAAIANEKEIELSDEQKRKFKKVKEEEDVIVDRKLQIHLKRRRYRKNKKQRETIESLKQKSSSVDCSNPDMEEETCDDGENATNNEVGCLNMKNDNIEDLGGNYDLDQVKPMNIGPLPELSKSSLPDVEQRGTKRLNDDEECSDTKKSRTVINSGDEADAVENNIVRNTNALDDQSEMQGTCTSIADSLPSQHLDKRFCCTICDKVALEIHEHPLLKVIICRDCIFLIEEKKHMKDLHPDCSVCYCAWCGGNNELVSCKSCKMLFCNNCIKKNLGTELLSEVQATGWLCYCCCPNLLQRLSSQLEKAMGSVETSVSSSSSDSDNSQAEINVTISSKRKRKKKIRRILDDAELGEETKRKIAIEKERQERLESLRVQFSASSNIMDSSGYNGNLSEGGSSEVLGDALTGYVVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSTDLGLRTALIVTPVNVLHNWRKEFIKWRPSEVKHLRVFMLEDVSRDRRAEILAKWRKKGGIFLIGYTAFRNLSFGKHVKDRHTAREICRALQDGPDILVCDEAHMIKNIKADITQALKQVKCHRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMNVAKKDLPPKTVFVISVKLSPLQRKLYKRFLDVHGFTNDRASNEKMKKRCFFVGYQALAQIWNHPGILQLTKEEKDYVRQEDAVENFLVDDSSSDENSDFNVPVGEKVRRANEFLQRKDQNGFFLKGWWNDLLHEKNYKELDYSGKMVLLLDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLPRRGKHGKLWKKGKDWYRLDGRTESSERQKLVERFNEPSNNRVKCSLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISKEEMLHLFEFGDDENPETLAELSQENGHSVEQTVPHSNGTSHSDKLMESLLGKHRPKWIANYHEHETLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPVQKPPEPNAAPPAPKTRNLSPTRLRNSFVTRKCTNLSHLLTLRSQGTKFGCSTVCGECAQEIRWEDLKNRDGRAAR 1477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0081 1477 MobiDBLite consensus disorder prediction 1401 1415 - -
Alju01g0081 1477 Gene3D - 693 973 IPR038718 -
Alju01g0081 1477 MobiDBLite consensus disorder prediction 343 374 - -
Alju01g0081 1477 MobiDBLite consensus disorder prediction 1397 1424 - -
Alju01g0081 1477 CDD SF2_C_SNF 1116 1259 - -
Alju01g0081 1477 Coils Coil 103 130 - -
Alju01g0081 1477 Pfam SNF2-related domain 741 1043 IPR000330 GO:0005524|GO:0140658
Alju01g0081 1477 MobiDBLite consensus disorder prediction 403 433 - -
Alju01g0081 1477 Pfam Helicase conserved C-terminal domain 1124 1248 IPR001650 -
Alju01g0081 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 973 IPR027417 -
Alju01g0081 1477 PANTHER RAD54-LIKE 30 1470 IPR044574 GO:0016887
Alju01g0081 1477 MobiDBLite consensus disorder prediction 1 52 - -
Alju01g0081 1477 Coils Coil 52 86 - -
Alju01g0081 1477 SMART helicmild6 1151 1248 IPR001650 -
Alju01g0081 1477 Gene3D - 984 1334 IPR027417 -
Alju01g0081 1477 ProSiteProfiles ADD domain profile. 475 607 IPR025766 -
Alju01g0081 1477 MobiDBLite consensus disorder prediction 415 433 - -
Alju01g0081 1477 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 741 924 IPR014001 -
Alju01g0081 1477 MobiDBLite consensus disorder prediction 1312 1336 - -
Alju01g0081 1477 MobiDBLite consensus disorder prediction 1313 1336 - -
Alju01g0081 1477 SMART ultradead3 715 936 IPR014001 -
Alju01g0081 1477 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1128 1296 IPR001650 -
Alju01g0081 1477 Coils Coil 1355 1375 - -
Alju01g0081 1477 MobiDBLite consensus disorder prediction 31 49 - -
Alju01g0081 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 981 1321 IPR027417 -
Alju01g0081 1477 CDD ADDz_ATRX 483 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0081 Alju-ChrAlju01 677467 699385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0081 783 1301 RAD5 or RAD16-like Gene Family AT5G22750 25.773 1.50e-31 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju01g0081 SNF2_N 1.3e-50 CL0023