Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0027 ATGGATTTCGATGCCGCAATCCCCATGTCCCCGGCGGCCCTCTCCCAAGAAGCAATGTGGCAAATGAAATTGAGATCAGGGGAAACAATGGAATCTCGACCTTATCCTGAGCGTCCAGGAGAATTAGATTGTTCTTACTACATCAGAACAGGCCTTTGTAGATTTGGGCCAACATGCCGATTTAATCATCCTCCAAACAGGAAGCTGGCTATTGCCACTGCAAGGATGAAAGGTGAGTTCCCAGAAAGAGTTGGACAGCCAGAATGTCAGTATTATCTGAAGACGGGAACTTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCAAGAGAAAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATAGTTTAGGCTATCCACTTCGCCCAAATGAACCTGAATGTGCTTATTATTTGAGAACTGGACAATGCAAATTTGGGAGCACTTGCAAATTCCACCATCCTCAGCCAAATAATATGATGATTTCATTGCGGGGCTCTCCTGTTTATCCTACTATTCATTCTCCAACTACACCTGGCCAGCAGTCATCATATGCAGGGGGGATCACAAATTGGTCTAGAGCTTCTTATATTCCTAGTCCACGATGGCAAGGCCCTTCAAGCTATGCACCTCTGATCCTACCTCAGGGAGTGGTTTCAGTTCCTGGGTGGAGTGCATACAGTGGTCAGATTGGATCAGTCTCTACTTCGGATAGTCCACAACAAACAGTAGGAAATGGTCAAATGTATGGAGTTTCCCGCCAGGATGAACCAGCAAATGCAGGATCTCAAGGGACATATTCTCAATTTCGTTCTGGCTCTGTTCCTCTGGGGTTTTATGCTCTGCAGAGGGAGAACATATTTCCTGAGAGGCCTGGTCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTTCATCATCCACGTGAGAGATTAATACCTGCTCCTGACTGTGTCTTGAGTCCTATAGGCCTTCCTCTACGTCCAGGAGAGCCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTGGCCCAAGTTGTAAGTTTGATCATCCAATGGGAATCTTCGCATACAATATATCTGCATCGCCTTCATCAGATACTTCTGTCCGACGTTTATTGGGGTCTTCGTCGGGAACTGCTGCATTGAATTTATCATCAGATGGACTTGTTGAGTCAGGCTCAACAAAGCCCCGGCGGCTTTCACTGTCAGAGACTAGACAGATGTCTTCTGAAGATAGCATTGATGATGAGGGATGA 1293 0.4594 MDFDAAIPMSPAALSQEAMWQMKLRSGETMESRPYPERPGELDCSYYIRTGLCRFGPTCRFNHPPNRKLAIATARMKGEFPERVGQPECQYYLKTGTCKFGATCKFHHPREKAGIAGRVALNSLGYPLRPNEPECAYYLRTGQCKFGSTCKFHHPQPNNMMISLRGSPVYPTIHSPTTPGQQSSYAGGITNWSRASYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQIGSVSTSDSPQQTVGNGQMYGVSRQDEPANAGSQGTYSQFRSGSVPLGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNISASPSSDTSVRRLLGSSSGTAALNLSSDGLVESGSTKPRRLSLSETRQMSSEDSIDDEG 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0027 430 FunFam CCCH type zinc finger protein 289 374 - -
Alju01g0027 430 Gene3D - 290 374 - -
Alju01g0027 430 Gene3D - 37 119 - -
Alju01g0027 430 Gene3D - 126 175 - -
Alju01g0027 430 SUPERFAMILY CCCH zinc finger 295 321 IPR036855 GO:0046872
Alju01g0027 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Alju01g0027 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Alju01g0027 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 43 65 IPR000571 GO:0046872
Alju01g0027 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 339 364 IPR000571 GO:0046872
Alju01g0027 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 293 318 IPR000571 GO:0046872
Alju01g0027 430 MobiDBLite consensus disorder prediction 398 430 - -
Alju01g0027 430 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Alju01g0027 430 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Alju01g0027 430 PANTHER PROTEIN PHOSPHATASE RELATED 17 383 - -
Alju01g0027 430 ProSiteProfiles Zinc finger C3H1-type profile. 38 66 IPR000571 GO:0046872
Alju01g0027 430 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Alju01g0027 430 MobiDBLite consensus disorder prediction 398 420 - -
Alju01g0027 430 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Alju01g0027 430 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Alju01g0027 430 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Alju01g0027 430 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Alju01g0027 430 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Alju01g0027 430 SMART c3hfinal6 291 318 IPR000571 GO:0046872
Alju01g0027 430 SUPERFAMILY CCCH zinc finger 340 364 IPR036855 GO:0046872
Alju01g0027 430 ProSiteProfiles Zinc finger C3H1-type profile. 291 319 IPR000571 GO:0046872
Alju01g0027 430 MobiDBLite consensus disorder prediction 231 250 - -
Alju01g0027 430 MobiDBLite consensus disorder prediction 231 267 - -
Alju01g0027 430 SUPERFAMILY CCCH zinc finger 132 157 IPR036855 GO:0046872
Alju01g0027 430 FunFam Zinc finger nuclease 2 37 114 - -
Alju01g0027 430 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0027 Alju-ChrAlju01 293354 298741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0027 19 428 C2H2 Transcription Factor Family AT3G02830 62.740 1.49e-179 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju01g0027 zf-CCCH 5.2e-09 CL0537