Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03873 ATGTTCTCAATTCAGCAATATGGTCACATTAGGACTCTATATACTGCATGTAAACATCGTGGGTTTGTTATGGTATCCTATTATGACATCCGTGCTGCTCGAACAGCCTTGCACGCATTACAAAACAAACCTTTACGACGCCGGAAACTTGACATTCACTTCTCAATACCAAAGGATAATCCATCTGACAAGGACATCAACCAAGGAACCTTGGTAGTTTTCAATTTGGACCCATCTGTTTCGAATGAGGACCTCCGTACAATATTTGGGGCATATGGGGAGGTCAAAGAGATACGGGAAACGTCTCACAAAGGCTATCACAAGTTTATTGAATTTTATGATGTGAGGGCTGCAGAAGCAGCACTAAAATCATTAAACAGGAGTAGCATAGCTGGGAGGCGAATAAAGGTGGAACTTAGCCGGCCTGGCGGAACTCGTCGAAATTTACTGCTTCAAACAAATCAAGAGCTTGATCATGATGACAAGCTAAGTTTCCGACATCAGATGGGTTCACCTGTGGCCAATTCTCCACCTGGTTACTGGTTGCGGTTCAACAGCACCGTTGAAAATAACTCATTTCAAACTATAAGTGATTCTCCTGGTTCTGGGATCATGAGTCCATCAATAGGAAACCATTTACCTGGATTAGCTTCTGTTTTGCACCCTCCACTATCCAATGCCATGAAGGGTGTAGCTATTGGGAAAGATTTAGCAGGGAGTCAGCATGCAGAGCATATATTTGCTAGTAGTAATTCATCGCATGGAGAGACATTTCAATCTCATTCTCTTCCAGAACCAAAATTCATCCCATATAGTGGAACTTTGTCTTCTTTTGGTTCATCTCCTTCAAATGGATCCTCGGTGGAAACCTTATCAGGATCACAATTTTTATGGGGAAGTCCGAACTTGTACTCACAGGACATCAAACCTTCAGCTTGGCCAACACCATCTGTGGGGCATTCATTTACAGCAAATGGAAATAGCCATGCCTTCCAAAACCCTGCTCAAGAGAGTTCTTTTATTGGTTTGTCCCAGAATCGTCACCATAATCATGTTGGCTCTGCTCCATCAGGTTTTCCTTTTGAGAGAAACTTTGGAGTCCTTTCGAAGTCGCCTGAAACCTCGTTTGTGAACCATGTTGGTTATGGAGGCATAGGTCTGGGTCACAGTAAGGGGAATTACATGGTTAATATGGGTGAATCCGTTAATGCTGGCATCACTATACCAAGAAATATGTCTGAACATGGTTCGCCAAACATTGGAATGAGATCATCTCCCAGACTTAGTCTTGTGTTTTCGGGTAATGGTCCATACCCAGGATTGCCACCTACTACTACTACTACTACTACTACTACTTCAGTGTTTGGTTTCATGGACCCTGGGCGGAATAGGCGCATAGAGAACAATGGGGGCCAAGCTGATAGCAGCAAGAAGCAATTTCATCTTGACTTGGATAGGATTAAAAACAGTGAAGACAGAAGGACTACCTTAATGATAAAGAACATCCCAAATAAATACACCTCAAAAATGTTATTAGCTGCTATTGATGAAAAGCACAAGGGTACCTATGATTTTTTCTATCTACCAATCGACTTTAAGAATAAATGCAATGTGGGATACGCATTTATCAACATGCTGTCGGCATCGCACATTATTCCATTCTATGAGACATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCATCCCTGGCATATGCACGAATCCAAGGAAAGGCTGCATTGGTGAACCACTTCCAGAATTCAAGTCTGATGAACGAAGATGAGCGGTGCCGCCCAGTCGTTTTCCATTCACAGGATCCTGAAGGTGGTGATAAGATCATACAAGATTATACAAGTGATTCGACCTTGGAGACAAAATAA 1893 0.4226 MFSIQQYGHIRTLYTACKHRGFVMVSYYDIRAARTALHALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRTIFGAYGEVKEIRETSHKGYHKFIEFYDVRAAEAALKSLNRSSIAGRRIKVELSRPGGTRRNLLLQTNQELDHDDKLSFRHQMGSPVANSPPGYWLRFNSTVENNSFQTISDSPGSGIMSPSIGNHLPGLASVLHPPLSNAMKGVAIGKDLAGSQHAEHIFASSNSSHGETFQSHSLPEPKFIPYSGTLSSFGSSPSNGSSVETLSGSQFLWGSPNLYSQDIKPSAWPTPSVGHSFTANGNSHAFQNPAQESSFIGLSQNRHHNHVGSAPSGFPFERNFGVLSKSPETSFVNHVGYGGIGLGHSKGNYMVNMGESVNAGITIPRNMSEHGSPNIGMRSSPRLSLVFSGNGPYPGLPPTTTTTTTTTSVFGFMDPGRNRRIENNGGQADSSKKQFHLDLDRIKNSEDRRTTLMIKNIPNKYTSKMLLAAIDEKHKGTYDFFYLPIDFKNKCNVGYAFINMLSASHIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVNHFQNSSLMNEDERCRPVVFHSQDPEGGDKIIQDYTSDSTLETK 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03873 630 PANTHER RNA RECOGNITION MOTIF-CONTAINING 5 616 - -
Aip10g03873 630 CDD RRM3_MEI2_like 497 582 IPR034454 -
Aip10g03873 630 CDD RRM1_MEI2_like 5 59 IPR034453 -
Aip10g03873 630 Gene3D - 66 148 IPR012677 -
Aip10g03873 630 CDD RRM2_MEI2_like 68 138 - -
Aip10g03873 630 Gene3D - 2 65 IPR012677 -
Aip10g03873 630 SUPERFAMILY RNA-binding domain, RBD 496 581 IPR035979 GO:0003676
Aip10g03873 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 142 IPR000504 GO:0003723
Aip10g03873 630 SUPERFAMILY RNA-binding domain, RBD 6 145 IPR035979 GO:0003676
Aip10g03873 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 57 IPR000504 GO:0003723
Aip10g03873 630 SMART rrm1_1 496 572 IPR000504 GO:0003723
Aip10g03873 630 SMART rrm1_1 70 138 IPR000504 GO:0003723
Aip10g03873 630 MobiDBLite consensus disorder prediction 605 630 - -
Aip10g03873 630 Pfam RNA recognition motif 2 494 590 IPR007201 -
Aip10g03873 630 PANTHER PROTEIN MEI2-LIKE 2 5 616 - -
Aip10g03873 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 136 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03873 Aip-Chr10 136455675 136460392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03873 16 126 Eukaryotic Initiation Factors Gene Family AT1G71770 28.099 8.79e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03873 - - lang:109328336 926.776