Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03866 ATGCCTCGTAAGGTAAACTACGGACTCGATTACGACGATGATTATGGCGATGAATATGACGACTATGATGATTATTATGAAGACTATGGAGAGGTACCTGAAACAAAGCAAGAGACACCGAGACCTCCTGGGGTTTGGCGATGCACCATTTGCACGTATGACAATGATGAGAGTATGACATCTTGTGATATTTGTGGTGTTATACGCCGTGACTTTGTTAACACTGGTACATCCAATATTAAACAAACAGCTCCTTTCAAGTTTGATGTTCCATCCCCTGATGATGTAGTGTATACTGGTCTACGTTCTTCCAAAACAGCTTCAAAAGACAAAATTATGAATAATGACCATTCTGTTCAATCAAATGTTGAAAGTTTAGAGAATTTAACATCACTAATGCAAAAGGGTAGGCAGGATAGGTCAGCTGAGAGCAAACTTTCAAAGAAGCCAGCAGTTCATCTGGAAACTAGTGATAAAACTTCAAATGTGAATAAGAAAAATGGTACACTTGATATTCGCTCAAGCAAAGGAAAGGCTGGTAGTTCATCTGCAATGCCTGAAGTCAAAGGTAGTGATGCAATTAATTTCTCTTCTATCAAAGACGGAAAATCCGAAAGTCTTTCCAGCAGTTTCAACAAAATAGCTGTGGACGTAAGATCTGGGAGTTCAGATAATACTAACTCTAAGGGATCTCGTCCACAAGTTTCTTACAAACCTGAAAAATGGATGCTACCTCAACAAGCTGAAGATACGTTGACTCAGCTGAATCTTGCAATTGTTGGACATGTTGATTCTGGGAAATCAACACTCTCAGGTAGGTTACTTCACCTATTGGGACGGATTTCCCAAAAACAAATGCACAAATTTGAAAAGGAGGCCAAAATACAGGGCAAAGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGCTCTGAAGAAAGGGAAAGGGGAATAACTATGACAGTGGCTGTTGCTTATTTTGACACTAAGAAATATCATGTTGTGGTTCTTGACTCCCCTGGGCATAAAGATTTTGTGCCAAACATGATTTCTGGAGCAACACAGGCTGATGCTGCAATTCTTGTCATAGATGCTTCACGTGGTTCATTTGAAGCTGGTATGGATGGTGGCAAGGGACAAACTAGGGAGCATGCACAACTTATTAGAAGCTTTGGTGTTGACCAGGTTATAGTTGCAGTGAATAAGATGGATACAGTAGCGTATGCCAAAGATCGATTTGATTATATAAGACAGCAGTTGGGAATGTTTCTGCGCACTTGTGGTTTCAAAGATTCTTGTGTGTCATGGATTCCTATGAGTGCAATGGAAAATCAAAATTTGGTCGCATCCCCTTCTGACGCTAGTTTTAAAAGCTGGTATAACGGACCATATTTGTTAGATGCAATTGACTCACTTCCACCACCTACTAGAGAATACTTGAAACCTCTGCTAATGCCAATATGTGATGTCATCAAATCACCCACACTTGGACAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTCTTAGTTATGCCTGCAGCCGTCATGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGCAGTGTTGCAAGGGCCGGAGATAATGTATCTGTAACATTGCAAGGTGTTGATGGAAGTAATGTGATTGCAGGAGGTGTGTTATGCCATCCTGACTTTCCTGTTGCAGTTTCTAATCATTTGGAGTTGAAAGTGCTTGTTTTGGATGGTGCAAGCCCTGTATTGATGGGTTCTCAGTTGGAGTTTCATATACACCATGCAAAGGAGCCTGCAAGGGTTTCAAGAATATCATCAATACTTGATCCAAAGACTGGTAAGGTGACCAAAAAGTCACCTCGCTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTAACTTTGCAGGAGCCAGTTTGTGTAGTAGATGTCTCAATTTGTAAAGCTCTTGGCAGGGTATCCCTAAGATCTTCAGGTAGAACAATCGCTGTGGGACTTGTGACGAGAATAATTGAAGAGCTACACTAG 2052 0.4157 MPRKVNYGLDYDDDYGDEYDDYDDYYEDYGEVPETKQETPRPPGVWRCTICTYDNDESMTSCDICGVIRRDFVNTGTSNIKQTAPFKFDVPSPDDVVYTGLRSSKTASKDKIMNNDHSVQSNVESLENLTSLMQKGRQDRSAESKLSKKPAVHLETSDKTSNVNKKNGTLDIRSSKGKAGSSSAMPEVKGSDAINFSSIKDGKSESLSSSFNKIAVDVRSGSSDNTNSKGSRPQVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKFEKEAKIQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASRGSFEAGMDGGKGQTREHAQLIRSFGVDQVIVAVNKMDTVAYAKDRFDYIRQQLGMFLRTCGFKDSCVSWIPMSAMENQNLVASPSDASFKSWYNGPYLLDAIDSLPPPTREYLKPLLMPICDVIKSPTLGQVSACGKLEAGALRSGSKVLVMPAAVMGTVRSLERDSNACSVARAGDNVSVTLQGVDGSNVIAGGVLCHPDFPVAVSNHLELKVLVLDGASPVLMGSQLEFHIHHAKEPARVSRISSILDPKTGKVTKKSPRCLTAKQSAVIEVTLQEPVCVVDVSICKALGRVSLRSSGRTIAVGLVTRIIEELH 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03866 683 MobiDBLite consensus disorder prediction 138 155 - -
Aip10g03866 683 Pfam Elongation factor Tu GTP binding domain 255 471 IPR000795 GO:0003924|GO:0005525
Aip10g03866 683 ProSitePatterns Zinc finger RanBP2-type signature. 46 65 IPR001876 -
Aip10g03866 683 SUPERFAMILY Translation proteins 474 569 IPR009000 -
Aip10g03866 683 PANTHER TRANSLATION FACTOR 124 681 - -
Aip10g03866 683 Gene3D Translation factors 480 569 - -
Aip10g03866 683 ProSiteProfiles Zinc finger RanBP2 type profile. 42 71 IPR001876 -
Aip10g03866 683 SUPERFAMILY Ran binding protein zinc finger-like 43 69 IPR036443 -
Aip10g03866 683 MobiDBLite consensus disorder prediction 134 189 - -
Aip10g03866 683 PANTHER OS04G0595300 PROTEIN 124 681 - -
Aip10g03866 683 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 252 483 IPR000795 GO:0003924|GO:0005525
Aip10g03866 683 MobiDBLite consensus disorder prediction 156 181 - -
Aip10g03866 683 Pfam Elongation factor Tu C-terminal domain 577 678 IPR004160 -
Aip10g03866 683 Gene3D Translation factors 574 683 - -
Aip10g03866 683 SMART zf_4 44 68 IPR001876 -
Aip10g03866 683 CDD EF1_alpha 256 475 - -
Aip10g03866 683 PRINTS GTP-binding elongation factor signature 256 269 IPR000795 GO:0003924|GO:0005525
Aip10g03866 683 PRINTS GTP-binding elongation factor signature 315 323 IPR000795 GO:0003924|GO:0005525
Aip10g03866 683 PRINTS GTP-binding elongation factor signature 335 345 IPR000795 GO:0003924|GO:0005525
Aip10g03866 683 PRINTS GTP-binding elongation factor signature 351 362 IPR000795 GO:0003924|GO:0005525
Aip10g03866 683 PRINTS GTP-binding elongation factor signature 396 405 IPR000795 GO:0003924|GO:0005525
Aip10g03866 683 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 575 679 IPR009001 -
Aip10g03866 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 497 IPR027417 -
Aip10g03866 683 CDD HBS1_C_III 570 678 - -
Aip10g03866 683 Gene3D - 243 474 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03866 Aip-Chr10 136388605 136394811 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03866 44 681 Eukaryotic Initiation Factors Gene Family AT5G10630 61.875 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03866 K14416 - gmx:100798594 1043.49