Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03865 ATGGGAATACAGGGTTTGTTGCCGCAGTTGAAATCGATAATGGCTCCGATTCACATAAAGGAGCTTGAGGGGTGCTGTGTTGCGGTGGACACTTATTCATGGCTCCACAAAGGCGCACTCTCTTGCAGCACCCACCTCTGCAAAAACATTCCCACAACCAGGCACATTGACTATTGCATGCATAGAGTGAATTTGCTGCGCCATTTTGGTATTAACCCCATTCTTGTATTTGACGGTGGACTTCTACCCATGAAGGCCGAACAAGAGAATAAGCGTGCCAGGTACCTTTCATATCTCTACTACTTAGGAACCTCACATTTCCATTATCCTATTCCTAATTTGCCACTGCAACTATACAAGCACAGGGTAAGAAAGGAAAATTTTGCGCGAGCTGTTGAACATGAGTCAAATGGAAATAACACTGCTGCTTTTGAGTGCTACCAGAAAGCTGTTGATATTTCACCTCTCATTGCGCGCGACCTAATTCAGGTATTGAGGCAGGAGAATGTGCAATATATTGTAGCTCCTTATGAGGCTGATGCTCAGATGGCTTTCTTGGCCATTAGTGGACAGGTTGATGCAGTTATAACTGAAGATTCTGATCTTATACCATTTGGATGCCCAAGGATTATCTTCAAAATGGACAAGTTTGGACAAGGAGTTGAGTTTCGGTACTCCATGTTACAGAAGAATAAGGAGCTTTGTTTTGAAGGATTTGACAGGCAAATGCTTCTCGAAATGTGTATCTTGAGTGGCTGCGACTATCTTCAGTCCCTGCCAGGTATGGGCCTGAAAAGAGCTCATGCAATCATTAAAAGATTTAAAACTTATGACAAGGTTCTTAAGCACTTGAGATACAGTGGTGTTTCTGTGCCTCCCTTATACGAAGAGTCATTCAGGAAGGCTATATTGACTTTCCACTTTCAACGGGTGTATGATCCAATTAATGAAAATGTTATTCATTTGTCGAATATACCTGATGATATTTGCGACGAGTTAGATTTTTTAGGCCCATCACTGCCAAAAGATATAGCACAAGGCATAGCAAAAGGAGATCTCGATCCATTTACCAAAATGCCATTTGAGGGGGCGATTCTTAATCCCGGATTAGCAACTGCTGGAACTTCACAATTTAAAACTATTCATTCTGAAAGTGTGAAGAAAAAGATTGATCTGCCTGTGCAAAAGAATCTCTTGACTAAGTATTTTTGTTTTGCATCTGTTGAAGCAAAAAGGAATTTCAGAGCACCTCGGGTACAACCCACCCCTGCTAATCATGGTACATTTGATTCCTCTTTTATCAATTCTATGGATCATGAAACTTCAGAGGCTACAGCTAGCAAGACAAAGAACTCCACTGCCACTTTAGTTGACTCCGAGAATTCGGACCCTGACAGTAGCCCTCCTCCTGCAAATGACTTTATTGAAAACAGCTTAGCAACCAATTTTTCTGAGTATATGAAATCTCCATCTCATGTTTCTATGGTGGATGAAAGAAACAGAAGTCCTGAAAATACAGCACTACGACAAGTTAGGCAGCCAATTCATAAACCCTGTGTGGGGTTGCATAAGGAGCATGAGCGTACACTTGTTCAAGACACGATTGAGTCAAAAACCAAGGAGGTTACAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAACAAAGTAGAAAAGAATGATTATGATGATAAACAAGCTCACCCGTCTGAAGCTGGCACTTTAATTGGTGAGGAAAAAAATTCCATATCCGACGGTGATTCAAGTGGCAATCTTGTGAAGAATAATAAAGACTTGAAGAGGAAAACCTCCCCTAATGACAACATTCAAAATGAAAATTTGCTGCCGAGGTCTATTTGTCCTACATCACCCCCTCATGATAATGGTTACTCTGATCACAATGTTGATACATCACATGGAAAAAATAATAACGGTGAAGAGAAATTCGGTGTAAACATTTCCCATCTAGGCCATTATTCAGAAATAGCTGAGAAATCTGTAGAAAGATTTGCCTCCGTGATCTCATCCTTCAGATGCTCTTCTGGCTCTCGTGCCAGTGGTCTCCGTGCTCCTCTAAGAGATGTTCGGAACAGTTGCAATAACAGGCCAACAAATGTGGATTTCGGACAATATGCATACGTGTCAAAACAAAGGAAGACCAGCAGAATTAAACTTGATTGA 2184 0.4116 MGIQGLLPQLKSIMAPIHIKELEGCCVAVDTYSWLHKGALSCSTHLCKNIPTTRHIDYCMHRVNLLRHFGINPILVFDGGLLPMKAEQENKRARYLSYLYYLGTSHFHYPIPNLPLQLYKHRVRKENFARAVEHESNGNNTAAFECYQKAVDISPLIARDLIQVLRQENVQYIVAPYEADAQMAFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVEFRYSMLQKNKELCFEGFDRQMLLEMCILSGCDYLQSLPGMGLKRAHAIIKRFKTYDKVLKHLRYSGVSVPPLYEESFRKAILTFHFQRVYDPINENVIHLSNIPDDICDELDFLGPSLPKDIAQGIAKGDLDPFTKMPFEGAILNPGLATAGTSQFKTIHSESVKKKIDLPVQKNLLTKYFCFASVEAKRNFRAPRVQPTPANHGTFDSSFINSMDHETSEATASKTKNSTATLVDSENSDPDSSPPPANDFIENSLATNFSEYMKSPSHVSMVDERNRSPENTALRQVRQPIHKPCVGLHKEHERTLVQDTIESKTKEVTRKVIVRSAYFQHNKVEKNDYDDKQAHPSEAGTLIGEEKNSISDGDSSGNLVKNNKDLKRKTSPNDNIQNENLLPRSICPTSPPHDNGYSDHNVDTSHGKNNNGEEKFGVNISHLGHYSEIAEKSVERFASVISSFRCSSGSRASGLRAPLRDVRNSCNNRPTNVDFGQYAYVSKQRKTSRIKLD 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03865 727 Gene3D - 1 235 - -
Aip10g03865 727 MobiDBLite consensus disorder prediction 418 476 - -
Aip10g03865 727 CDD H3TH_EXO1 242 313 IPR037315 GO:0003677|GO:0035312
Aip10g03865 727 Pfam XPG I-region 169 254 IPR006086 GO:0004518
Aip10g03865 727 MobiDBLite consensus disorder prediction 561 647 - -
Aip10g03865 727 CDD PIN_EXO1 1 230 IPR044752 GO:0046872
Aip10g03865 727 SMART xpgineu 166 237 IPR006086 GO:0004518
Aip10g03865 727 MobiDBLite consensus disorder prediction 607 647 - -
Aip10g03865 727 SUPERFAMILY PIN domain-like 2 254 IPR029060 -
Aip10g03865 727 MobiDBLite consensus disorder prediction 424 476 - -
Aip10g03865 727 SMART HhH_4 241 274 IPR008918 GO:0003677|GO:0003824
Aip10g03865 727 SMART xpgn3 1 99 IPR006085 GO:0004518
Aip10g03865 727 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 702 IPR006084 -
Aip10g03865 727 Gene3D - 237 309 - -
Aip10g03865 727 PANTHER EXONUCLEASE 1 1 702 IPR032641 GO:0006281|GO:0035312
Aip10g03865 727 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Aip10g03865 727 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Aip10g03865 727 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 186 206 IPR006084 -
Aip10g03865 727 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 165 182 IPR006084 -
Aip10g03865 727 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 244 259 IPR006084 -
Aip10g03865 727 Pfam XPG N-terminal domain 1 93 IPR006085 GO:0004518
Aip10g03865 727 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 239 363 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03865 Aip-Chr10 136384054 136388060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03865 1 295 Core DNA Replication Machinery Family AT5G26680 25.806 6.64e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03865 K10746 - gmx:100798062 922.154