Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03854 ATGGCTGCGAATCCATCGTCAGAAACAAATGGAAAGCATGAAGTGGTTATGAATATAGACAACAACAACAACGAAAACTCGTCATCATCACCACCCACCTCTCTCCCTGTCTCTTTGTTGCAGAAGTTTGTGGCAGAAGTGGTTGGCACATATTTCTTGATATTTGCAGGGTGTGCTGCGGTGGTTGTGAACAAGAACAACGACAATGTCGTTACACTTCCGGGGATTTCTATTGTTTGGGGATTGGCCGTTATGGCACTCGTGTATTCCATCGGTCACATCTCTGGTGCCCACTTCAACCCTGCTGTTACCATCGCTTTTGCTTCTACTAGAAGGTTCCCCTTCAAGCAGGTACCGGTCTATGTAGCAGCTCAGGTTGTTGGATCTACACTTGCAAGTGGAACCCTGAGATTATTATTCGATGGGAAGCAAAACCAATTCGCAGGAACACTCCCAGCTGGCTCTGATCTACAAGCATTTGTCATCGAATTCATCATCACTTTTTATCTTATGTTCGTCATATCCGGGGTCGCAACCGATAGCAGAGCGGTAGGTGAGTTGGCTGGGCTTGCAGTTGGCTCCACGGTGTTGCTGAATGTGATGTTTGCAGGGGCAATAACAGGGGCATCAATGAACCCAGCAAGGAGCATAGGGCCAGCAATAGTGCACAATCAATACAAAGGGATATGGATATACTTGGTAGCTCCAGTTTTGGGGGCTGTTGCTGGTACTTGGGTTTATAACGCTCTCAGGCACACCGCCAACCCCCCTTCTCGTGTTATTAAAAACACCGCTTCTTTCGTCAAAAGACAAGCTAGTCTTTAG 825 0.4715 MAANPSSETNGKHEVVMNIDNNNNENSSSSPPTSLPVSLLQKFVAEVVGTYFLIFAGCAAVVVNKNNDNVVTLPGISIVWGLAVMALVYSIGHISGAHFNPAVTIAFASTRRFPFKQVPVYVAAQVVGSTLASGTLRLLFDGKQNQFAGTLPAGSDLQAFVIEFIITFYLMFVISGVATDSRAVGELAGLAVGSTVLLNVMFAGAITGASMNPARSIGPAIVHNQYKGIWIYLVAPVLGAVAGTWVYNALRHTANPPSRVIKNTASFVKRQASL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03854 274 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03854 274 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03854 274 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03854 274 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03854 274 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03854 274 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03854 274 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Aip10g03854 274 Gene3D Glycerol uptake facilitator protein. 2 258 IPR023271 -
Aip10g03854 274 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03854 274 Pfam Major intrinsic protein 37 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03854 274 PANTHER AQUAPORIN NIP2-1 6 270 IPR034294 -
Aip10g03854 274 SUPERFAMILY Aquaporin-like 36 254 IPR023271 -
Aip10g03854 274 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 6 270 - -
Aip10g03854 274 CDD MIP 41 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03854 Aip-Chr10 136280890 136282401 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03854 12 272 Major Intrinsic Protein MIP AT5G37820 54.887 1.40e-98 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03854 K09874 - gmx:100798526 388.652