Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03853 ATGGGTGAGTATTCATCAAGAAGCGGTGATGTTGAGGAAGCAGCAGGAGGAGGTGGTACCTGCAAAACAAGCAAATATTTTCTTCTGTTTCAGAAGATGGTGGCGGAGTTGGTGGGGACCTATTTCTTGATATTTACAGGGTGCGCAGCGATTGCGGTGAACAACGACTACGGGAAGCAAATAACGCTTCTTGGAATTGCAACTGTTTGGGGATTGGTTGTCATGGTCATCGTTTACTCCGTTGGTCATGTCTCTGGGGCCCATCTCAACCCTGCTGTAACTATTGCTTTTGCCTCCATCACAAAGTTTCCACTCACTCAGGTACCGGCTTATATAGCAGCTGAATTGCTTGGAGCGATCCTAGCAAGCGGAACAGTGAGACTAGTATTTAGTGGGAAGCATCTTGAAGTTCAGTTCACAGGAACGTTGCCGAGTGGCTCAAACATCCAATCCTTCGTCATTGAATTCATTCTCACTTTTTTCCTTATGTTTGTCATTTGCGCCGTTGCTACCGATAGCAGAGCGGTTGGTACCTTGGCTGGAGTTGCAATCGGGTCTACCATACTAATTAATGTGCTGATTGCAGCGCAAGTGTCAGGAGCATCAATGAACCCAGCAAGGAGTCTAGGACCTGCATTTGTGCACCATGAATACAGAGGAATATGGATATACTTGTTGTCACCCACCATTGGAGCTGTGGCGGGTGCATGGGTCTACAACATACTTAGGGAGAAGAAGGAGAAGCCCATCATTCACCTCACCAAGAATGCCTCTTTCAACTGA 783 0.47 MGEYSSRSGDVEEAAGGGGTCKTSKYFLLFQKMVAELVGTYFLIFTGCAAIAVNNDYGKQITLLGIATVWGLVVMVIVYSVGHVSGAHLNPAVTIAFASITKFPLTQVPAYIAAELLGAILASGTVRLVFSGKHLEVQFTGTLPSGSNIQSFVIEFILTFFLMFVICAVATDSRAVGTLAGVAIGSTILINVLIAAQVSGASMNPARSLGPAFVHHEYRGIWIYLLSPTIGAVAGAWVYNILREKKEKPIIHLTKNASFN 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03853 260 CDD MIP 31 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03853 260 Pfam Major intrinsic protein 29 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03853 260 ProSitePatterns MIP family signature. 88 96 IPR022357 -
Aip10g03853 260 TIGRFAM MIP: MIP family channel proteins 35 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03853 260 PANTHER NODULIN-26 22 259 - -
Aip10g03853 260 Gene3D Glycerol uptake facilitator protein. 10 251 IPR023271 -
Aip10g03853 260 PANTHER AQUAPORIN NIP2-1 22 259 IPR034294 -
Aip10g03853 260 PRINTS Major intrinsic protein family signature 31 50 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03853 260 PRINTS Major intrinsic protein family signature 70 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03853 260 PRINTS Major intrinsic protein family signature 107 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03853 260 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03853 260 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03853 260 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip10g03853 260 SUPERFAMILY Aquaporin-like 25 247 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03853 Aip-Chr10 136271004 136274069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03853 7 259 Major Intrinsic Protein MIP AT5G37820 52.157 4.38e-89 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03853 K09874 - gmx:547904 326.25