Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03827 ATGGATCAGGCAAGAAGCGAAGACAGTGCTGAGGTGTTGGATAATGTAGTTGGAGAAGGAGTTGCAACTGATGCAGGAGATGGTAGTGAATTGGTTGAGAGAGATGATGTAGTTGGAGAAAATGGAACTTCAGATCTGGGTTTGAATACGGAGCTAGAGGAGGAGGAGGAGACTCGAGTGGTTAAGGATCAGGAAACAGCTGACTTGCAAAAAATCAGTGATACATTGTGTGGGGTTGAGCAAGGAACTAGTTATAGCTCAAGAAATTTGGTCAGTGGGGAGGTTGTACTTGAGACCTGTGTTGTAATAGATCCTCCTGCTCAGATCGAGCATGTCCATGGAAAATCGAAATCAAAAGCCAATGAATCAGGGTTGAGCAAGCTAGCCATGAAAGCACCAAAGGCAGTGTCTGAGACAGATAAAAATTCATGTGCAATTGATATAAACAAAGAGTTTAGTGAGAACTTGGAAGGTGAAATGATTTGTAGAATTTGTCATCTGGCATCAGGGCAACCAATAGAAGCAATGATGGTTGGGACTGCAAACAATGAAACTAGTACAGATTTGATTCAACTTGGTTGTGCATGTAAGGATGAGCTAGGCATTGCACACAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAGCAGGTTGTGTGAAATATGTGGAGAGACTGCAAAAAATGTTTCAGAATCACAGGTTATCAATCATTCATTTATGGAAGAGTGGAACGAAAGTAGGTTCATCGACGGTGGTAATAGTACCTCAACCGGCTTCTTTGGAAGATGCTGGCGTGGACAGCCATTCTGTAACTTTTTGATGGCATGCTTGGTAATAGCTTTCGTTCTACCATGGTTCTTCCGTGTAAATATGTTCTAG 882 0.424 MDQARSEDSAEVLDNVVGEGVATDAGDGSELVERDDVVGENGTSDLGLNTELEEEEETRVVKDQETADLQKISDTLCGVEQGTSYSSRNLVSGEVVLETCVVIDPPAQIEHVHGKSKSKANESGLSKLAMKAPKAVSETDKNSCAIDINKEFSENLEGEMICRICHLASGQPIEAMMVGTANNETSTDLIQLGCACKDELGIAHSHCAEAWFKLKGSRLCEICGETAKNVSESQVINHSFMEEWNESRFIDGGNSTSTGFFGRCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03827 293 PANTHER ZINC FINGER, RING-CH-TYPE 1 293 - -
Aip10g03827 293 SMART ringv_2 161 224 IPR011016 GO:0008270
Aip10g03827 293 MobiDBLite consensus disorder prediction 1 63 - -
Aip10g03827 293 Pfam RING-variant domain 181 223 IPR011016 GO:0008270
Aip10g03827 293 ProSiteProfiles Zinc finger RING-CH-type profile. 154 230 IPR011016 GO:0008270
Aip10g03827 293 SUPERFAMILY RING/U-box 159 226 - -
Aip10g03827 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 235 IPR013083 -
Aip10g03827 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03827 Aip-Chr10 136021182 136023906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03827 157 292 C3H Transcription Factor Family AT5G05830 40.714 1.26e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03827 - - gmx:100791129 367.081