LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip10g03826	ATGGCTCACCTTAAGGAACTGCCCGCTTCTGTTGTTAATGGGAATGATTCCCTCCCTGGTAATATAATATCCACTACAATTGGTGGAAAAGATGGGGAGCCCAAACAGACTATAAGTTACATGGCAGAACGTGTCGTGGGTACTGGGTCATTTGGAATCGTTTTCCAGGCAAAATGCTTGGAAAATGGGGAGGCAGTAGCCATCAAGAAAGTTTTACAGGACAAAAGATATAAGTGTCGTGAACTAGAGTTAATGCGCATAATGGATCATCCAAATATCATCTGTCTGAAGCATCATTTCTTTTCCACTACAAGTACTGGTGAGCTGTTCCTTAATTTGGTGATGGAATATGTTCCCGAGTCTATGTATCGAGTCTTGAAGTTCTATAGCACTGCTAACCAAAGAATGCCTCTTATCTATGTTAAACTTTATATGTACCAGATTTTCAGGGGGCTGGCTTATATCCACACTGTCCCTGGAGTATGCCACAGAGATTTGAAGCCACAAAATATACTGGTTGACCCTGTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGGTCAAAGGAGAAACTAATATATCATATATATGTTCCCGGTTCTATCGCGCACCAGAACTCATATTTAGTGCTACTGAGTATACTACTTCAATTGATATTTGGTCAGCTGGTTGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCATTGTTTCCGGGTGAAAATGCAGTGGATCAGGTTGCAGAGATTTTCAAGGTCCTTGGCACACCCACTCGAGAGGAAGTCCGCTGCATGAATCCAAACTACAACAACTTCAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGATATTCCACAAAAAGATGCCTCCCGAAGCAATTGATCTCACTTCCCGGCTTCTGCAGTATTCCCCTAGTCTCCGATGTACTGCACTAGAAGCTTGTGCACACCCATTCTTTGATGAACTTCGTGAACCCCATGCTCGCTTGCCAAATGGTCGTCCATTTCCACCACTATTCAACTTTAAACAAGAGCTATCCACAGCACCTCCAGAGCTTGTTAACAAGTTGATCCCTGGCCACATGAAGCGGCAACTAGCGCTGCAACTTCCCCATTCTGCAGGAACATGA	1143	0.4392	MAHLKELPASVVNGNDSLPGNIISTTIGGKDGEPKQTISYMAERVVGTGSFGIVFQAKCLENGEAVAIKKVLQDKRYKCRELELMRIMDHPNIICLKHHFFSTTSTGELFLNLVMEYVPESMYRVLKFYSTANQRMPLIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPVTHQVKICDFGSAKVLVKGETNISYICSRFYRAPELIFSATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQVAEIFKVLGTPTREEVRCMNPNYNNFRFPQIKAHPWHKIFHKKMPPEAIDLTSRLLQYSPSLRCTALEACAHPFFDELREPHARLPNGRPFPPLFNFKQELSTAPPELVNKLIPGHMKRQLALQLPHSAGT	380

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip10g03826	380	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468
Aip10g03826	380	Gene3D	Transferase(Phosphotransferase) domain 1	120	367	-	-
Aip10g03826	380	Pfam	Protein kinase domain	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Aip10g03826	380	ProSiteProfiles	Protein kinase domain profile.	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Aip10g03826	380	CDD	STKc_GSK3	35	327	IPR039192	-
Aip10g03826	380	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	2	374	-	-
Aip10g03826	380	ProSitePatterns	Protein kinases ATP-binding region signature.	46	70	IPR017441	GO:0005524
Aip10g03826	380	SMART	serkin_6	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Aip10g03826	380	PANTHER	BNAANNG31110D PROTEIN	2	374	-	-
Aip10g03826	380	SUPERFAMILY	Protein kinase-like (PK-like)	39	352	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip10g03826	Aip-Chr10	136015541	136019588	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip10g03826	44	335	MAP Kinase Gene Family	AT3G59790	35.526	8.98e-56	186

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Aip10g03826		Pkinase	3.8e-64	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip10g03826	K14502		-	gmx:100779909	690.649

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