Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03798 ATGAAGAACAAGTCAAAGTTTGTTGGGGTGAGGCAAAGAGCTTCTGGAAAATGGGCAGCAGAGATCAAAGATACATCAAAGCAGATAAGGATTTGGCTTGGAACCTATCAAACTGCTGAGGAAGCTGCTAGAGCCTATGATGAAGCTGCTTTTCTCCTTAGAGGTTCCAACACTCGCACCAACTTCAACACTCGTCACACCATTGATCCCAATTCTCCTATATCTCTCAAAATCAGAAACCTGCTCGATCGTAGAACTATCTCAACTCGAATTCAAAACCAATTCCCTATGGTTAGTCCCAATGTTCAAGATGCCAAGCAAGAAAACCATGCATGTAGATATAGTGGTAGTAGTGAAGGTGAGTCTTTGTTTTGGGTTCAGAACCAAGTTTCTGATAATGTTTATAGGCCAGAATTGAATATGATGAACTGCGCAACGGGTCCGGTTGAACTAAATGAGTATCAGTTTGATTATTCATGGGCATTAGCTCAACAAAGGATTAATGAATTATCAATATTATCACCAGAAAGTGGATTCAATGAAGAAAGGAAACTGTCAGATTCACTTTTTGCCATGAATGAGGATGAACATGGGAGTGCGTATGAGTGTGATGTCAGTTATCCTCTCTCCCACTTGTTCTGCTTTAATTGA 651 0.404 MKNKSKFVGVRQRASGKWAAEIKDTSKQIRIWLGTYQTAEEAARAYDEAAFLLRGSNTRTNFNTRHTIDPNSPISLKIRNLLDRRTISTRIQNQFPMVSPNVQDAKQENHACRYSGSSEGESLFWVQNQVSDNVYRPELNMMNCATGPVELNEYQFDYSWALAQQRINELSILSPESGFNEERKLSDSLFAMNEDEHGSAYECDVSYPLSHLFCFN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03798 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 2 171 - -
Aip10g03798 216 SUPERFAMILY DNA-binding domain 5 64 IPR016177 GO:0003677
Aip10g03798 216 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Aip10g03798 216 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Aip10g03798 216 CDD AP2 5 62 IPR001471 GO:0003700|GO:0006355
Aip10g03798 216 Pfam AP2 domain 5 55 IPR001471 GO:0003700|GO:0006355
Aip10g03798 216 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Aip10g03798 216 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Aip10g03798 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 171 - -
Aip10g03798 216 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03798 Aip-Chr10 135764608 135765258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03798 3 214 AP2-EREBP Transcription Factor Family AT5G19790 39.834 8.18e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip10g03798 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03798 K09286 - gmx:100803832 230.72