Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03776 ATGTCAGTGCTGATCGTGACAAGCTTAGGGGACATTGTCGTTGATTTACATACCGACAAGTGCCCCCTCACCTGCAAGAACTTCCTCAAGCTCTGCAAGATTAAGTACTATAATGGCTGTCTATTTCACACTGTTCAGAAGGATTTCACTGCTCAGACTGGTGATCCCACAGGAACAGGCACTGGTGGCGATTCCATCTACAAGTTTCTTTATGGTGATCAAGCTCGATTTTTTGGCGATGAAATTCGGGTTGATCTGAAGCATTCCAAGACTGGAACAGTTGCCATGGCAAGTGCAGGAGAGAATCTGAATGCTTCACAGTTTTATATCACTCTGCGTGATGACCTCGATTACCTTGATGGGAAACACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGGCTTTGACTAGAATAAATGAGGCTTATGTGGATGAAAAGAGCAGACCATATAAAAATATACGAATCAAGCACACATACATCCTAGAGGATCCTTTTGATGATCCTCCTCAGCTAGCTGAGTTCATTCCTGAAGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTTGATGATGAGGTGCGACTTGAAGATGATTGGGTTCCCATGGATGAACAATTAAATCCAGCAGAGCTTGAGGAGGTTATTAGAGAGAAGGAAGCACGTTCTAGGGCAGTCGTACTTGAGAGTATTGGCGATATTCCTGATGCTGAGATTAAACCTCCGGATAATGTGCTATTTGTTTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACGATATTTTCACGATTTGGAACTGTATCATCGGCTGAAATCATCCGGGACCACAAGACTGGTGACAGTTTATGCTATGCTTTCATTGAGTTTGAGGACAAAATGTCATGTGAACAGGCATATTTTAAGATGGATAATGCTTTGATCGATGATCGAAGAATACATGTGGATTTTAGTCAAAGTGTGGCAAAATTGTGGTCGCAATATAGGCGGAATCAGAAGGGCAAAGgtggaggttgcttcaaatgtggttctgcagatcatattgctaaggattgcactGCTGATGATTCAATGAAACAACCTGCAAAATTCGTCTTGAAGGATAACAATACCCAACATGGTGGAGATAACACCAGATATGAGATGGTTTTTGATGGAGATAACACACAAAATCCAAAGAGAGATGATAGGAAAAGCCAACGGCGTGAGAGGGATGACATAGTTGAGAACAGTATGAAGGACAATTTTAAAGATCATATTCGTAGAGGGCGTAAGGATGAGATGGTAGGCTCCAACAACAGAAATAGGTACAGTGATAGACACAGGGAACGTGGGGGAGATGGAGATGATAAAGCACGAGCTGAAAAAGAATCAAGAGATTCAGATTATCATTCAGACAGGAAAGACAGAGAAAAGCATAAGGAAATAAATAGAGACGATGACTACAGGCGGAAAGATGAGGTAGACCCAAGAAAAAGACACTTGGATGATAGATACACAGAAAGACGTGCTAGTGGAGATCACAGGAGAGAATCAGATGGTAACCGTCTGGAGAAAAGGGATGGCAGAGATTATAGGAAGAGACCTGAAGACAGCAGAAGGCATGACAGGAAGATCGATAGCAGACCAAAAAGAAGAAGTCCTGATGAAGATTACAAACATAAAAGGGAGGATGAAGATTATAAACGCAGAAGGGAGGATGAGGATTATAGACACGGAAGGGAAGAACGCGGACTTAGAAGACTAGATACTGAGCCTCGTGACTATTCCGATAGGAAGCATCATGAAATCTTGCATGTGATAAGAGATTGTCCAAGAGCTGCGACTATTTGGGTGAAGCTCATCAACCCCGCTGCTGTAGCCCTGTTCTTTAACCTCAACTTCCAAGGATGGATTGAATTAAATTTGCAAAATTCCATTGGTAAGTCACCATCTGAGTGGATAGATGAGTTTTATGTTGCTTGTTGGATGATATGGAAGTGGAGAAACCTTGAGGTCTTCTCTCCTCCTTATGTAAGACCCAAGAACGCTGTTGAAGTGATTAGGAATTCCCTCAATAATTACAGGAAAGCGTATGAAAGAAGAAGTCAGAAATGCACAATAAATGAAACCAAAAGCCAGGAAGGTATATGGATGCCCCCTCCTATTGGGTGGGTAAAATTGAATACTGATGGAGCAGTTTCAAAATTAAAAAATATGGCTGGGTGTGGCGGTTTAATCCGAACGTGGAAGGGGGAGTGGGTTGCAGGCTTTCAAGCAAAGATAGGCAATACTCAAGTTTTTCAAGCGGAAATGTGGGGAATTTTTTATGGTTTACAAACAGCTTGGGACTTGGGAATAAGAAAAATTATTGTTGAAACAGATGCCCTAAAAGTTTGCCAACAGATTACAAAAGGAGAATCTCATAATCAATACAATTCTCTTCTTAGAAAAGTCCAAGACCAGCTGGCGAAACCTTGGGAGGTTAGAGTTCTGCATATTCACAGGAAAGGCAACACCTGTGCCGACTGGATGGCTAAGCATAGCTTGAATAAATCATTTGGATATAGTTTCATTGATAAACCTGAGCCAAACTTAGAAATCCTCATGGAGCAAGATTGGAAGGTCTCTAGACCCACTAGTCAAATTAGTTAG 2637 0.4088 MSVLIVTSLGDIVVDLHTDKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSIYKFLYGDQARFFGDEIRVDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFEALTRINEAYVDEKSRPYKNIRIKHTYILEDPFDDPPQLAEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIREKEARSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKMSCEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRNQKGKGGGCFKCGSADHIAKDCTADDSMKQPAKFVLKDNNTQHGGDNTRYEMVFDGDNTQNPKRDDRKSQRRERDDIVENSMKDNFKDHIRRGRKDEMVGSNNRNRYSDRHRERGGDGDDKARAEKESRDSDYHSDRKDREKHKEINRDDDYRRKDEVDPRKRHLDDRYTERRASGDHRRESDGNRLEKRDGRDYRKRPEDSRRHDRKIDSRPKRRSPDEDYKHKREDEDYKRRREDEDYRHGREERGLRRLDTEPRDYSDRKHHEILHVIRDCPRAATIWVKLINPAAVALFFNLNFQGWIELNLQNSIGKSPSEWIDEFYVACWMIWKWRNLEVFSPPYVRPKNAVEVIRNSLNNYRKAYERRSQKCTINETKSQEGIWMPPPIGWVKLNTDGAVSKLKNMAGCGGLIRTWKGEWVAGFQAKIGNTQVFQAEMWGIFYGLQTAWDLGIRKIIVETDALKVCQQITKGESHNQYNSLLRKVQDQLAKPWEVRVLHIHRKGNTCADWMAKHSLNKSFGYSFIDKPEPNLEILMEQDWKVSRPTSQIS 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03776 878 CDD RNase_H_like 722 841 IPR044730 -
Aip10g03776 878 Gene3D - 718 846 IPR036397 GO:0003676
Aip10g03776 878 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 488 IPR035542 -
Aip10g03776 878 MobiDBLite consensus disorder prediction 389 569 - -
Aip10g03776 878 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Aip10g03776 878 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Aip10g03776 878 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Aip10g03776 878 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Aip10g03776 878 SMART rrm1_1 244 317 IPR000504 GO:0003723
Aip10g03776 878 Gene3D - 235 347 IPR012677 -
Aip10g03776 878 SMART c2hcfinal6 339 355 IPR001878 GO:0003676|GO:0008270
Aip10g03776 878 Gene3D - 1 172 IPR029000 -
Aip10g03776 878 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Aip10g03776 878 CDD cyclophilin_RRM 4 169 IPR035538 -
Aip10g03776 878 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Aip10g03776 878 Pfam Zinc knuckle 339 354 IPR001878 GO:0003676|GO:0008270
Aip10g03776 878 SUPERFAMILY RNA-binding domain, RBD 230 339 IPR035979 GO:0003676
Aip10g03776 878 ProSiteProfiles RNase H type-1 domain profile. 716 845 IPR002156 GO:0003676|GO:0004523
Aip10g03776 878 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Aip10g03776 878 SUPERFAMILY Ribonuclease H-like 718 846 IPR012337 -
Aip10g03776 878 CDD RRM_PPIL4 240 322 - -
Aip10g03776 878 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Aip10g03776 878 Pfam Reverse transcriptase-like 723 842 IPR002156 GO:0003676|GO:0004523
Aip10g03776 878 ProSiteProfiles Zinc finger CCHC-type profile. 340 353 IPR001878 GO:0003676|GO:0008270
Aip10g03776 878 SUPERFAMILY Cyclophilin-like 1 177 IPR029000 -
Aip10g03776 878 MobiDBLite consensus disorder prediction 368 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03776 Aip-Chr10 135509106 135518161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03776 7 166 U-box Gene Family AT5G67530 40.625 6.66e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03776 K12735 - gmx:100776900 875.544