Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03758 ATGGGAAGACCAAGGTGCTTTTTGGACATTAGCATTGGCGACGAGTTAGAAGGAAGAATAGTGATTGAACTCTTCGATGACGTGGTTCCCAAAACCGCTGAGAATTTTAGGGCTCTCTGCATTGGCAACAAAGGCATTGCTCCTAACACTCACGTCCCCCTTCATTTCAAGGGTTCTTGCTTTCACCGTGTTATTAAGGGCTTTATGATCCAAGGAGGTGATATATCTGCTGGAGATGGTACTGGAGGAGAGTCGATTTATGGACTGAAGTTTGAAGATGAAAATTTTGAGTTGAAGCATGAAAGGAAAGGGATGTTATCCATGGCGAATTGTGGTCCCAATACAAATGGGTCTCAATTTTTTATCACAACTACCCGAACTCCTCATCTAGACGGCAAACATGTTGTATTTGGGAAGGTAGTCAAAGGAATGGGAGTAGTCCGCTCGGTTGAGCATGTGACAACTGGAGATAATGATTGTCCTACACTTGATGTTAAAATCGTGGATTGTGGGGAAATTCCTGAAGGAGAAGATGATGGAATACTTGACTTTTTCAAGGATGGTGATACTTTCCCTGATTGGCCAGCAGACCTTGACGAGAGACCTGATGAGCTTCAGTGGTGGATGAATGCTGTAGACTCTATTAAAACTTTTGGAAATGGGTATTACAAGAAACAAGACTATAAAATGGCTCAAAGAAAGTATCGCAAGGCTTTGCGCTACTTGGATGTTTGTTGGGAGAAAGAAGGGATTGATGGAGGAGATCTTAAAGGAGCATTATTCGATGCTGAGTTTGCACTGCGTGAAGAGGACAACAATGTCAAAGCATTATTCCGGCAAGGACAGGCACATATGGCACTCCATGACATAGATGCTGCAGTTGAAAGCTTTAAAAATGCACTGGTCTTAGAGCCAAATGATGCTGGGATTAAGAAGGAACTTGCTGCTGCCAGGAAGAAGGTTGCTGATAGGCCAAGGCTCAACTTCAAGGGTGGAAAGCTGCATGGAATGCAAAAGATACTATCTTGA 1029 0.4325 MGRPRCFLDISIGDELEGRIVIELFDDVVPKTAENFRALCIGNKGIAPNTHVPLHFKGSCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANCGPNTNGSQFFITTTRTPHLDGKHVVFGKVVKGMGVVRSVEHVTTGDNDCPTLDVKIVDCGEIPEGEDDGILDFFKDGDTFPDWPADLDERPDELQWWMNAVDSIKTFGNGYYKKQDYKMAQRKYRKALRYLDVCWEKEGIDGGDLKGALFDAEFALREEDNNVKALFRQGQAHMALHDIDAAVESFKNALVLEPNDAGIKKELAAARKKVADRPRLNFKGGKLHGMQKILS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03758 342 CDD cyclophilin_ABH_like 4 171 - -
Aip10g03758 342 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 254 325 - -
Aip10g03758 342 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 252 - -
Aip10g03758 342 Gene3D - 1 179 IPR029000 -
Aip10g03758 342 SMART tpr_5 212 245 IPR019734 GO:0005515
Aip10g03758 342 SMART tpr_5 274 307 IPR019734 GO:0005515
Aip10g03758 342 Pfam Tetratricopeptide repeat 275 307 IPR013105 -
Aip10g03758 342 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 254 325 - -
Aip10g03758 342 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 252 - -
Aip10g03758 342 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Aip10g03758 342 SUPERFAMILY Cyclophilin-like 3 175 IPR029000 -
Aip10g03758 342 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Aip10g03758 342 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Aip10g03758 342 SUPERFAMILY TPR-like 208 321 IPR011990 GO:0005515
Aip10g03758 342 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Aip10g03758 342 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Aip10g03758 342 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Aip10g03758 342 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Aip10g03758 342 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Aip10g03758 342 ProSiteProfiles TPR repeat profile. 274 307 IPR019734 GO:0005515
Aip10g03758 342 Gene3D Tetratricopeptide repeat domain 252 329 IPR011990 GO:0005515
Aip10g03758 342 Gene3D Tetratricopeptide repeat domain 208 251 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03758 Aip-Chr10 135334930 135338497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03758 18 171 U-box Gene Family AT5G67530 43.871 1.86e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03758 K05864 - gmx:100804110 555.829