Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03718 ATGGCTGCTACTTCTTCATCATCAACACCGTTCTTCCAAATCAGACAAGAGAATCATCATGAGAATCTGATTTCACAGCAGCAGCAGCAGCTTCTTCAATCGTCATCCACTACAACTTCTGCACCACCACCACCACCACCACCACCACTCCCTCAAAAGAAAAGAAGAAACCACGCTGCAGGAACACCATATCCAGATGCAGAGGTGATAGCACTGTCGCCGAAGACGTTAATGGCGACAAACAGGTTCGTATGTGAAGTTTGCAACAAAGGATTCCAAAGAGAACAGAACTTACAGCTTCACAGAAGAGGACACAACCTTCCATGGAAGCTCAAGCAGAAGAACCCTAACAAAGAGCCTAAAAGGAAGGTCTATCTCTGCCCTGAACCCACATGCGTCCACCACCACCCTTCCCGGGCTCTCGGCGACCTCACCGGCATCAAGAAACACTTCTCTCGCAAACACGGCGAGAAGAAGTGGAAGTGTCACAAGTGTTCCAAGAAGTACGCCGTCCAGTCCGACTGGAAGGCGCACTCCAAGACCTGCGGTACCAAAGAGTATAGGTGCGACTGCGGCACCCTCTTCTCCAGGCGTGACAGTTTCATCACTCACAGAGCCTTTTGTGATGCATTAGCACATGAAAATGCATCAAGACACCCTCCTCTAAACCCTTTTGGAAATCTCTATCCCACAAACAACAACAACAACAACAACATCTTGAGCCTTGGAAATAGTACTACCACTTTCATTGCACCAAAATTTGAGCATTTAATATCACCACCGCCACCACCACCACCACCATTCAATAACAACAACCACCACCACCACCACCAATCTGCATTATTATTTTCACATCACTCGTCATCATCACCATCACCATTCTTCATGGAAGGATTTCAAGAACTCCAGCCTCATCATCAACACCAACACCAACAAGAACCCTTATTATTCTCATCTAATAATAACAACATGAACATGTTCAACCTCAGTTTCTTCCCAAGAAGCAATAATAGCAGTGGCGGTGGAAGTAGCATTATCACCGATCATCATCATCAAATTGGATCAGCTTTTTCTTCTTCTTCATCTTCAATCTTCGGCAACAATAATTCATCACTGCAACAACAACAACAACAACAACAACAACAACAAGAGAACAACAACAGCGACAACAACATGTGTTCTCCACACATGTCTGCAACTGCATTGCTCCAGAAAGCTGCACAAATGGGTTCAACAACTTCAACCACCAATAACAGTAACCACAGTGCTTCTTCTCTACTAAGAGCAATGGCCAATAATAATAACAACCACCACCACCACCTCAATGCTGACGTGGACAATGATGAACACAACGACAATCTTCGCGGATTGATGAACTCTTTGGCAAATGAAAACATATCTTCTTCCATATTCGGCAACGTGAAAGAGAATGGAAACAACCACAATAACAACAATCTTGCTGGTGTGTGCTTTGGAGGATCTGATGATAAGTTGACGTTAGATTTTCTTGGTGTTGGAGGAGTTATCAGAAACATCACTGGGATCAGTACTACTTCTTTCGACCCAACAATGCAATGA 1578 0.4442 MAATSSSSTPFFQIRQENHHENLISQQQQQLLQSSSTTTSAPPPPPPPPLPQKKRRNHAAGTPYPDAEVIALSPKTLMATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPNKEPKRKVYLCPEPTCVHHHPSRALGDLTGIKKHFSRKHGEKKWKCHKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAHENASRHPPLNPFGNLYPTNNNNNNNILSLGNSTTTFIAPKFEHLISPPPPPPPPFNNNNHHHHHQSALLFSHHSSSSPSPFFMEGFQELQPHHQHQHQQEPLLFSSNNNNMNMFNLSFFPRSNNSSGGGSSIITDHHHQIGSAFSSSSSSIFGNNNSSLQQQQQQQQQQQENNNSDNNMCSPHMSATALLQKAAQMGSTTSTTNNSNHSASSLLRAMANNNNNHHHHLNADVDNDEHNDNLRGLMNSLANENISSSIFGNVKENGNNHNNNNLAGVCFGGSDDKLTLDFLGVGGVIRNITGISTTSFDPTMQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03718 525 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 3 514 - -
Aip10g03718 525 MobiDBLite consensus disorder prediction 261 289 - -
Aip10g03718 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Aip10g03718 525 MobiDBLite consensus disorder prediction 1 38 - -
Aip10g03718 525 Gene3D Classic Zinc Finger 125 208 - -
Aip10g03718 525 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Aip10g03718 525 SUPERFAMILY beta-beta-alpha zinc fingers 82 180 IPR036236 -
Aip10g03718 525 MobiDBLite consensus disorder prediction 39 53 - -
Aip10g03718 525 SMART c2h2final6 160 180 IPR013087 -
Aip10g03718 525 SMART c2h2final6 83 105 IPR013087 -
Aip10g03718 525 SMART c2h2final6 125 155 IPR013087 -
Aip10g03718 525 Pfam Zinc-finger double-stranded RNA-binding 83 105 IPR022755 -
Aip10g03718 525 Gene3D Classic Zinc Finger 66 124 - -
Aip10g03718 525 MobiDBLite consensus disorder prediction 271 289 - -
Aip10g03718 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 514 - -
Aip10g03718 525 MobiDBLite consensus disorder prediction 355 395 - -
Aip10g03718 525 Coils Coil 372 392 - -
Aip10g03718 525 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03718 Aip-Chr10 135066346 135070397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03718 52 220 IDZ Gene Family AT2G02070 87.574 1.77e-103 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip10g03718 zf-C2H2_jaz 6.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03718 K25870 - gmx:102663407 449.899