Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03716 ATGGAATCTGTTACCTCAGCCCAGAAAACCAACCAACCCAAGGAAACACCGTTCCCACTATTCCCACCTGGAATCCCAATCCCTACGACAGCCATAGAAAAAGCTGTAACCGCCACCACCACCGCCACCAACGTTCCAACGCCGTTTCTCATAATACCCAAACGCGAACCCGTTGAAGAATGCACCACCCCCATCCCTACCTCTAACAATCAAGACGTCAAACCTATATTCCCAAATGCCCCCCACCGCGAAACCCTACCTGCACCTGCAACTACACCTCCTTCAGCCACCTCCTGCGACCCAAGCGACAACGAAAATGGCCTATACGAAGAGTTCAACCGAGTCTCTCAGCTCTTCCGTACCGCTTTCGCCGAGCAGCAGCAGCAGCAGCAGCTTCGAGCATCTCAGCAAATGGATTCCTCAAACGACCTCGTTTTGGACCCTAATTCGGGGGCAATTGTTCCTGTGCCTCCTCCGCAGGAATACGGGGGTCATTGGAATGGAAACGACGCCGTTGGGTACGAGGGTTCTTCGTCTAGCGGGGGGAATATGACGCTGGCGAAGAGGAACAGGCTGAAGGAGCTTGTGAGGGTAAAAGATCTGAGTCTGAAGGACCAGCGGCATTACCGAGAGGTGGTGAGAAGGACGAGGTTGATCTATGACTCACTTCGGGTGCTGGCGACGGCGGAGGAGGAGAGGAGGATGATGCTGACTGATTGGAGGAAGGCCAGAGGGGACCTTAGGGCATCGACTTTGATGAAAACTTGCGGCCTTTGGCTTAACCGCGACAAGAGGATCGTCGGCGCCATCCCTGGAGTTTTTGTTGGGGATGTGTTCTTATACAGGATGGAATTATGTGTTGTCGGCCTTCACGGGCAGACACAGGCCGGAATTGATTATCTTCCGGCGAGTATGAGTTCCAACGGTGAGCCAATTGCCACCAGTGTCATTGTTTCTGGTGGCTATGAGGATGATATGGATGATGGTGATGTTATCATTTACTCTGGTCATGGGGGACAGGACAAGCATTCTAGGCAGGTGTTTCATCAGAAGTTGGAAGGAGGGAATTTGGCATTGGAGAGGAGTATGCATTATGGGATTGAGGTGAGGGTTATTCGGGGATTGCGGTACGACGGAACTGCCACTGCTGCCAGTAAGGTTTATGTTTATGATGGTTTGTATAGGATTATGGATTGCTGGTTTGATGTTGGGAAGTCTGGTTTCGGTGTTTATAAGTATAAGCTGTTTAGGGTTGATGGGCAGGCTAAGATGGGTAGTGCTGTTCTTAAGGAGGCTTGTATGCTTAGGAAGGATCCATTGTGTTTTAAGCCTGTGTGTTGTTTGTCTCTTGATATTTCGCATAGGAGGGAGAACGTTGCGATTCGGCTTTTTAACGACATTGATAAGAGTAATGAACCGCTTTGTTATGAGTATCTTCCGAAGACTAATTTTCCGCCTATGGTGTTTCATCAGACTGGGAACGCTATGGGTTGTGAGTGTGTGGATGGTTGTGTTGAAGGCTGCTTTTGCGCTATGAAAAATGGAGGCGAGTTTCCTTATAATCAGAGTGGGATTTTGTTGAGAGGGAAGCCTATAATATTTGAATGTGGCCCCTTTTGCCGATGTCCTCCGCATTGTCGGAACCGTGTCACACAGAAGGGGTTGAAAAGTAGGTTGGAAGTGTTTAGGTCTAGGGAAACTGGCTGGGGAGTTAGATCCTTGGACCTTATACAAGCTGGTGCTTTTATATGCGAATATACGGGTGTTATCCTGACCAGGCAGCAAGCACAAATTTTGACCATGAATGGTGATGCATTGATATATCCTAATCGGTTTACTGACAGGTGGGCAGAATGGGGGGATATATCTCTAATAAATTCCAATTATGTTCGCCCATCATTTCCGTCGATACCTCCTTTAGATTTTGCTTTGGATGTGTCAAGATTGAGGAATGTAGCTTGCTACATGAGTCATAGTACATCTCCGAATGTGTTGGTTCAGTTTGTTCTGTATGATCACAATAATTTAATGTTCCCTCACCTTATGCTATTTGCAATGGAGAGCATCCCTCCGATGAGAGAGCTCAGCCTTGATTACGGGGTGACTGATGACTGGACAGGCAAGCTCGCTATATGTAACTGA 2142 0.4823 MESVTSAQKTNQPKETPFPLFPPGIPIPTTAIEKAVTATTTATNVPTPFLIIPKREPVEECTTPIPTSNNQDVKPIFPNAPHRETLPAPATTPPSATSCDPSDNENGLYEEFNRVSQLFRTAFAEQQQQQQLRASQQMDSSNDLVLDPNSGAIVPVPPPQEYGGHWNGNDAVGYEGSSSSGGNMTLAKRNRLKELVRVKDLSLKDQRHYREVVRRTRLIYDSLRVLATAEEERRMMLTDWRKARGDLRASTLMKTCGLWLNRDKRIVGAIPGVFVGDVFLYRMELCVVGLHGQTQAGIDYLPASMSSNGEPIATSVIVSGGYEDDMDDGDVIIYSGHGGQDKHSRQVFHQKLEGGNLALERSMHYGIEVRVIRGLRYDGTATAASKVYVYDGLYRIMDCWFDVGKSGFGVYKYKLFRVDGQAKMGSAVLKEACMLRKDPLCFKPVCCLSLDISHRRENVAIRLFNDIDKSNEPLCYEYLPKTNFPPMVFHQTGNAMGCECVDGCVEGCFCAMKNGGEFPYNQSGILLRGKPIIFECGPFCRCPPHCRNRVTQKGLKSRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVILTRQQAQILTMNGDALIYPNRFTDRWAEWGDISLINSNYVRPSFPSIPPLDFALDVSRLRNVACYMSHSTSPNVLVQFVLYDHNNLMFPHLMLFAMESIPPMRELSLDYGVTDDWTGKLAICN 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03716 713 Pfam Pre-SET motif 452 549 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip10g03716 713 SMART preset_2 449 541 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip10g03716 713 MobiDBLite consensus disorder prediction 80 106 - -
Aip10g03716 713 ProSiteProfiles SET domain profile. 557 700 IPR001214 GO:0005515
Aip10g03716 713 Gene3D SET domain 426 713 IPR046341 -
Aip10g03716 713 MobiDBLite consensus disorder prediction 1 15 - -
Aip10g03716 713 Pfam SAD/SRA domain 267 421 IPR003105 -
Aip10g03716 713 SUPERFAMILY SET domain 442 702 IPR046341 -
Aip10g03716 713 MobiDBLite consensus disorder prediction 1 23 - -
Aip10g03716 713 Pfam SET domain 568 700 IPR001214 GO:0005515
Aip10g03716 713 ProSiteProfiles Pre-SET domain profile. 496 554 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip10g03716 713 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 53 710 - -
Aip10g03716 713 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 128 713 IPR025794 GO:0016571
Aip10g03716 713 SMART G9a_1 263 421 IPR003105 -
Aip10g03716 713 MobiDBLite consensus disorder prediction 90 104 - -
Aip10g03716 713 Gene3D - 265 425 IPR036987 -
Aip10g03716 713 SUPERFAMILY PUA domain-like 249 429 IPR015947 -
Aip10g03716 713 ProSiteProfiles YDG domain profile. 268 417 IPR003105 -
Aip10g03716 713 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 53 710 - -
Aip10g03716 713 SMART set_7 557 706 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03716 Aip-Chr10 135034875 135039621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03716 210 702 Su(var)3-9 homologs AT5G04940 38.400 4.62e-103 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip10g03716 SAD_SRA 6e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03716 K11420 - gmx:100804592 969.533