Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03714 ATGGCTTCAACTAGCTTCCAACCAAAGAGCAAGTCTCCTTCCACTGTGATCAGCTTCTTCAAGATTATTCACAGGAAAAGTCTCCAAGCTGGAACTCTTAAGATACCAAGAAAGTTCAGTAGGATATATGGTAGTAGTGTGCCGAATCCAGTGTATCTTAAGCTTCCAGATGGCACTCAATGGAAAATAGATTGGACTAATCATGATGGTGAGATTATATTTAAAAATGGTTGGAAAGAGTTTGCTGCATATTACTCTCTAGATCAAGGGCACTTGTTGTGGTTTGACTATAAAAAAACTTCTCTTTTTGAGGTACACATATTTGACACGAGTTGCCTTGAAATAAACTATCCTCCCAATGATCACACTGATGATGATTGTGTTGAGATTTTAAATAAGCCCCCATCACCACTCCGGGGGGATCTAAGGAAGCGGTCGGTAGCACCATTATCGACTCCTTCTAAAACGAAACGATTGAGAAGTGCTACAAAATCTAGAGATGTTGAAAGAGGTAGCCAATCTAAGGATACAAGCCTTGAAATGCCAGTATTTTCATCTCCCCGGCAAGATTTCCTTGATTTCTCTCCTGGGACCAGTGGGTTTCAGGCTCTGAAAGAAGCTGAGAAGTTCAGCTCTGAAAATCCCTTTTGCATTGTCAAGATAAGGCAAGCTATACGTTCAAACCGTAATTTTCCAGCTTCCTTTTTCATAAAATACTTTAAAAATGAGGAGCAGAAAGTAAAGATAAGCTTTGAGGGGAAGTTGTTTCCTGCAAAGTTGCGCTATTATCGACAAAATTCTACTGCCTTTATCTCTTCTGGATGGCTCCAATTTGCTCAAGCAAGTAAATTACAACCTGGGGATGTTACTGTGTTTGAGCTCGTCGATAGAGATGATCCGGTGTTTGAAACTCATATTTATAGAGCCAAAGCTTTCAAGTCTTCGTCCTGTGGCTTTCAATCTCTGAAAGCAGCTCGGAATTTCAAGTCAGAAAATCCCTCTTTCATGGTCAAGATCACACAAACAAACCTACCAAGAACAAATGCTGCCATACCAGTTCCCTTCTTCACAAAGTATTTTGCAAAGAAGAAGCCGAATATACAGATAAAGTTGAGAAACAAGTTGTTGCCAGCAAAGTTGCTCTATTATCCATCATCTTCTGCTGCCTATATCTCTGCCGGTTGGCAAGCTTTTGTTGGTGCCAGTAATTTAAAGGCTGGAGATGTTATGAATCTAATCCATGAAAATGCAACTCATTTCTTTCCAATCAAACACCCCATGAGATATATGCATGATTTGAATGTGAAAAATGCAAAATCAGAAGAAAATTTATTAATATCAACTAACCAACAAAAGATAAAAGCTGCATCAACAGCTTCAACTTACACCGGGCCCACTAAAGACAAATGTCAGTGTCCACTTAAAAAGTGTAGCAGACACAATAATTCTTACTTGTGTCAAAAAATAACCATGGCTTCATGTAGCTACCAACCAAACAAGCATTCTCCTCCAAAAACTTTGATCCGTTTCTTTAAGATTATTCTCAGACAAAGCCTTCAAGATGGAAATCTTAAGATACCAAACAAGTTCACTAGCAAATATGGTGGTGGTGTGAAAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTCAATGGAAAGTACAATGGACTCAGCATGATGGTGACATTTTATTTGAAAAGGGTTGGAAAGAATTTGCTGCATATTACTCTCTGGATCATGGTCACTTGTTGCGATTTGAGTTCAATGGAACTTCTTGTTTTGAGGTACACATATTTGACATGAGTGGCCTTGAAATACACTATCCTTTCAATAACCGGATCGACAATGATTCGGTTGAGACTTTGAATGAGCTACCACCACAATGTTGGGGAAGAGAGCAGAAAAGATTGAAAACACCATTATCATTATCATTGCCTTTTACAAGTAAGCAATTGAGAATTGCCACAGAAACTAGAGATGTGGAAGGAGGTAGTCAACCTGAAGAGAAAAACATTGAGATGCCAATAATTCCATCTGTCATTCATCGTTCGGATGTTTTTGAGCCTGGGACCTGTGGTTTTCGATGCCTGGAAGAAGCTCAGAAGTTCAACTCAGAAAATCCCTCTTTCATGATCAAGCTAGGGAAGAGTAATCTACAGAGATCAAGGGCTAATTTTAAAGCTTCCTTCTACATAAAGTATTTTGAAAACAAGGAGCAGAATGTAGAGATACGGTACGAAGGCAAGCTGTGGCCTGCAAAGTTGCTCTGTTATCCCGCAGCAGCAGCTGCCTATATCTCGAATGGTTGGCGGCCTTTTAGTCTTGAGAATGATTTAAAAGTTGGAGATGTTTGTGTCTTTGAGCTCATCAGTGGAGAAAACCCAGTGCTTGATGCTCATATTTATAGAGCCAATGGTTAA 2421 0.3957 MASTSFQPKSKSPSTVISFFKIIHRKSLQAGTLKIPRKFSRIYGSSVPNPVYLKLPDGTQWKIDWTNHDGEIIFKNGWKEFAAYYSLDQGHLLWFDYKKTSLFEVHIFDTSCLEINYPPNDHTDDDCVEILNKPPSPLRGDLRKRSVAPLSTPSKTKRLRSATKSRDVERGSQSKDTSLEMPVFSSPRQDFLDFSPGTSGFQALKEAEKFSSENPFCIVKIRQAIRSNRNFPASFFIKYFKNEEQKVKISFEGKLFPAKLRYYRQNSTAFISSGWLQFAQASKLQPGDVTVFELVDRDDPVFETHIYRAKAFKSSSCGFQSLKAARNFKSENPSFMVKITQTNLPRTNAAIPVPFFTKYFAKKKPNIQIKLRNKLLPAKLLYYPSSSAAYISAGWQAFVGASNLKAGDVMNLIHENATHFFPIKHPMRYMHDLNVKNAKSEENLLISTNQQKIKAASTASTYTGPTKDKCQCPLKKCSRHNNSYLCQKITMASCSYQPNKHSPPKTLIRFFKIILRQSLQDGNLKIPNKFTSKYGGGVKNPVYLKPPDGTQWKVQWTQHDGDILFEKGWKEFAAYYSLDHGHLLRFEFNGTSCFEVHIFDMSGLEIHYPFNNRIDNDSVETLNELPPQCWGREQKRLKTPLSLSLPFTSKQLRIATETRDVEGGSQPEEKNIEMPIIPSVIHRSDVFEPGTCGFRCLEEAQKFNSENPSFMIKLGKSNLQRSRANFKASFYIKYFENKEQNVEIRYEGKLWPAKLLCYPAAAAAYISNGWRPFSLENDLKVGDVCVFELISGENPVLDAHIYRANG 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03714 806 Pfam B3 DNA binding domain 510 600 IPR003340 GO:0003677
Aip10g03714 806 Pfam B3 DNA binding domain 229 309 IPR003340 GO:0003677
Aip10g03714 806 Pfam B3 DNA binding domain 718 803 IPR003340 GO:0003677
Aip10g03714 806 Pfam B3 DNA binding domain 19 110 IPR003340 GO:0003677
Aip10g03714 806 ProSiteProfiles B3 DNA-binding domain profile. 747 805 IPR003340 GO:0003677
Aip10g03714 806 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 309 - -
Aip10g03714 806 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 507 804 - -
Aip10g03714 806 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 320 414 - -
Aip10g03714 806 ProSiteProfiles B3 DNA-binding domain profile. 252 310 IPR003340 GO:0003677
Aip10g03714 806 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Aip10g03714 806 ProSiteProfiles B3 DNA-binding domain profile. 509 602 IPR003340 GO:0003677
Aip10g03714 806 MobiDBLite consensus disorder prediction 160 174 - -
Aip10g03714 806 PANTHER B3 DOMAIN-CONTAINING 12 309 - -
Aip10g03714 806 PANTHER B3 DOMAIN-CONTAINING 320 414 - -
Aip10g03714 806 PANTHER B3 DOMAIN-CONTAINING 507 804 - -
Aip10g03714 806 SMART B3_2 19 111 IPR003340 GO:0003677
Aip10g03714 806 SMART B3_2 510 602 IPR003340 GO:0003677
Aip10g03714 806 SMART B3_2 216 310 IPR003340 GO:0003677
Aip10g03714 806 SMART B3_2 335 434 IPR003340 GO:0003677
Aip10g03714 806 SMART B3_2 710 805 IPR003340 GO:0003677
Aip10g03714 806 Gene3D - 694 805 IPR015300 -
Aip10g03714 806 Gene3D - 200 312 IPR015300 -
Aip10g03714 806 Gene3D - 319 423 IPR015300 -
Aip10g03714 806 CDD B3_DNA 18 109 IPR003340 GO:0003677
Aip10g03714 806 CDD B3_DNA 708 803 IPR003340 GO:0003677
Aip10g03714 806 SUPERFAMILY DNA-binding pseudobarrel domain 508 602 IPR015300 -
Aip10g03714 806 SUPERFAMILY DNA-binding pseudobarrel domain 210 310 IPR015300 -
Aip10g03714 806 Gene3D - 505 603 IPR015300 -
Aip10g03714 806 Gene3D - 13 112 IPR015300 -
Aip10g03714 806 CDD B3_DNA 509 600 IPR003340 GO:0003677
Aip10g03714 806 MobiDBLite consensus disorder prediction 134 180 - -
Aip10g03714 806 SUPERFAMILY DNA-binding pseudobarrel domain 13 111 IPR015300 -
Aip10g03714 806 SUPERFAMILY DNA-binding pseudobarrel domain 330 425 IPR015300 -
Aip10g03714 806 SUPERFAMILY DNA-binding pseudobarrel domain 703 805 IPR015300 -
Aip10g03714 806 CDD B3_DNA 231 308 IPR003340 GO:0003677
Aip10g03714 806 CDD B3_DNA 333 424 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03714 Aip-Chr10 135021902 135026786 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03714 510 805 B3 DNA Binding Superfamily AT3G18990 29.080 2.27e-31 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03714 B3 3.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03714 - - ahf:112717097 776.548