LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip10g03714	ATGGCTTCAACTAGCTTCCAACCAAAGAGCAAGTCTCCTTCCACTGTGATCAGCTTCTTCAAGATTATTCACAGGAAAAGTCTCCAAGCTGGAACTCTTAAGATACCAAGAAAGTTCAGTAGGATATATGGTAGTAGTGTGCCGAATCCAGTGTATCTTAAGCTTCCAGATGGCACTCAATGGAAAATAGATTGGACTAATCATGATGGTGAGATTATATTTAAAAATGGTTGGAAAGAGTTTGCTGCATATTACTCTCTAGATCAAGGGCACTTGTTGTGGTTTGACTATAAAAAAACTTCTCTTTTTGAGGTACACATATTTGACACGAGTTGCCTTGAAATAAACTATCCTCCCAATGATCACACTGATGATGATTGTGTTGAGATTTTAAATAAGCCCCCATCACCACTCCGGGGGGATCTAAGGAAGCGGTCGGTAGCACCATTATCGACTCCTTCTAAAACGAAACGATTGAGAAGTGCTACAAAATCTAGAGATGTTGAAAGAGGTAGCCAATCTAAGGATACAAGCCTTGAAATGCCAGTATTTTCATCTCCCCGGCAAGATTTCCTTGATTTCTCTCCTGGGACCAGTGGGTTTCAGGCTCTGAAAGAAGCTGAGAAGTTCAGCTCTGAAAATCCCTTTTGCATTGTCAAGATAAGGCAAGCTATACGTTCAAACCGTAATTTTCCAGCTTCCTTTTTCATAAAATACTTTAAAAATGAGGAGCAGAAAGTAAAGATAAGCTTTGAGGGGAAGTTGTTTCCTGCAAAGTTGCGCTATTATCGACAAAATTCTACTGCCTTTATCTCTTCTGGATGGCTCCAATTTGCTCAAGCAAGTAAATTACAACCTGGGGATGTTACTGTGTTTGAGCTCGTCGATAGAGATGATCCGGTGTTTGAAACTCATATTTATAGAGCCAAAGCTTTCAAGTCTTCGTCCTGTGGCTTTCAATCTCTGAAAGCAGCTCGGAATTTCAAGTCAGAAAATCCCTCTTTCATGGTCAAGATCACACAAACAAACCTACCAAGAACAAATGCTGCCATACCAGTTCCCTTCTTCACAAAGTATTTTGCAAAGAAGAAGCCGAATATACAGATAAAGTTGAGAAACAAGTTGTTGCCAGCAAAGTTGCTCTATTATCCATCATCTTCTGCTGCCTATATCTCTGCCGGTTGGCAAGCTTTTGTTGGTGCCAGTAATTTAAAGGCTGGAGATGTTATGAATCTAATCCATGAAAATGCAACTCATTTCTTTCCAATCAAACACCCCATGAGATATATGCATGATTTGAATGTGAAAAATGCAAAATCAGAAGAAAATTTATTAATATCAACTAACCAACAAAAGATAAAAGCTGCATCAACAGCTTCAACTTACACCGGGCCCACTAAAGACAAATGTCAGTGTCCACTTAAAAAGTGTAGCAGACACAATAATTCTTACTTGTGTCAAAAAATAACCATGGCTTCATGTAGCTACCAACCAAACAAGCATTCTCCTCCAAAAACTTTGATCCGTTTCTTTAAGATTATTCTCAGACAAAGCCTTCAAGATGGAAATCTTAAGATACCAAACAAGTTCACTAGCAAATATGGTGGTGGTGTGAAAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTCAATGGAAAGTACAATGGACTCAGCATGATGGTGACATTTTATTTGAAAAGGGTTGGAAAGAATTTGCTGCATATTACTCTCTGGATCATGGTCACTTGTTGCGATTTGAGTTCAATGGAACTTCTTGTTTTGAGGTACACATATTTGACATGAGTGGCCTTGAAATACACTATCCTTTCAATAACCGGATCGACAATGATTCGGTTGAGACTTTGAATGAGCTACCACCACAATGTTGGGGAAGAGAGCAGAAAAGATTGAAAACACCATTATCATTATCATTGCCTTTTACAAGTAAGCAATTGAGAATTGCCACAGAAACTAGAGATGTGGAAGGAGGTAGTCAACCTGAAGAGAAAAACATTGAGATGCCAATAATTCCATCTGTCATTCATCGTTCGGATGTTTTTGAGCCTGGGACCTGTGGTTTTCGATGCCTGGAAGAAGCTCAGAAGTTCAACTCAGAAAATCCCTCTTTCATGATCAAGCTAGGGAAGAGTAATCTACAGAGATCAAGGGCTAATTTTAAAGCTTCCTTCTACATAAAGTATTTTGAAAACAAGGAGCAGAATGTAGAGATACGGTACGAAGGCAAGCTGTGGCCTGCAAAGTTGCTCTGTTATCCCGCAGCAGCAGCTGCCTATATCTCGAATGGTTGGCGGCCTTTTAGTCTTGAGAATGATTTAAAAGTTGGAGATGTTTGTGTCTTTGAGCTCATCAGTGGAGAAAACCCAGTGCTTGATGCTCATATTTATAGAGCCAATGGTTAA	2421	0.3957	MASTSFQPKSKSPSTVISFFKIIHRKSLQAGTLKIPRKFSRIYGSSVPNPVYLKLPDGTQWKIDWTNHDGEIIFKNGWKEFAAYYSLDQGHLLWFDYKKTSLFEVHIFDTSCLEINYPPNDHTDDDCVEILNKPPSPLRGDLRKRSVAPLSTPSKTKRLRSATKSRDVERGSQSKDTSLEMPVFSSPRQDFLDFSPGTSGFQALKEAEKFSSENPFCIVKIRQAIRSNRNFPASFFIKYFKNEEQKVKISFEGKLFPAKLRYYRQNSTAFISSGWLQFAQASKLQPGDVTVFELVDRDDPVFETHIYRAKAFKSSSCGFQSLKAARNFKSENPSFMVKITQTNLPRTNAAIPVPFFTKYFAKKKPNIQIKLRNKLLPAKLLYYPSSSAAYISAGWQAFVGASNLKAGDVMNLIHENATHFFPIKHPMRYMHDLNVKNAKSEENLLISTNQQKIKAASTASTYTGPTKDKCQCPLKKCSRHNNSYLCQKITMASCSYQPNKHSPPKTLIRFFKIILRQSLQDGNLKIPNKFTSKYGGGVKNPVYLKPPDGTQWKVQWTQHDGDILFEKGWKEFAAYYSLDHGHLLRFEFNGTSCFEVHIFDMSGLEIHYPFNNRIDNDSVETLNELPPQCWGREQKRLKTPLSLSLPFTSKQLRIATETRDVEGGSQPEEKNIEMPIIPSVIHRSDVFEPGTCGFRCLEEAQKFNSENPSFMIKLGKSNLQRSRANFKASFYIKYFENKEQNVEIRYEGKLWPAKLLCYPAAAAAYISNGWRPFSLENDLKVGDVCVFELISGENPVLDAHIYRANG	806

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip10g03714	806	Pfam	B3 DNA binding domain	510	600	IPR003340	GO:0003677
	Aip10g03714	806	Pfam	B3 DNA binding domain	229	309	IPR003340	GO:0003677
	Aip10g03714	806	Pfam	B3 DNA binding domain	718	803	IPR003340	GO:0003677
	Aip10g03714	806	Pfam	B3 DNA binding domain	19	110	IPR003340	GO:0003677
	Aip10g03714	806	ProSiteProfiles	B3 DNA-binding domain profile.	747	805	IPR003340	GO:0003677
	Aip10g03714	806	PANTHER	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	12	309	-	-
	Aip10g03714	806	PANTHER	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	507	804	-	-
	Aip10g03714	806	PANTHER	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	320	414	-	-
	Aip10g03714	806	ProSiteProfiles	B3 DNA-binding domain profile.	252	310	IPR003340	GO:0003677
	Aip10g03714	806	ProSiteProfiles	B3 DNA-binding domain profile.	18	111	IPR003340	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip10g03714	Aip-Chr10	135021902	135026786	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip10g03714	510	805	B3 DNA Binding Superfamily	AT3G18990	29.080	2.27e-31	124

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Aip10g03714		B3	3.8e-09	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip10g03714	-		-	ahf:112717097	776.548

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