Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03711 ATGTCAATTACAAGCAGAATGGGTTTGTTTTACCAAGGTAAAGGTATAGCAGTGGTGGCTCTTGGCGGCAACAATTTCGAcgactccggcggcaacattcatggccccagagactccggcaaccaatggaaaattaaaagcagaagcaaaacagaACAATCCCTTCTCCGCAGCATCTCGGCGACGAGATCCAGCAGAGCTCCCCTTTCTCTCTCCCGTTTGCGCCCTCCTTCTCTGCCCTGTTTGGTGACGACGATGGCCTCAACCGGGACGGCGAcggtctcgatcaacggcagcagcggcgacgggaacaacgacgacgacaggactccatccttcctcttctccgtcgcgcgctttcctctttctccatggaagAATTTTAAAGCTTCCTTCTACACAAAGTATTTTGAAAACAAGGAGCAGAATGTAGAGATTCAGTACAAAGGAAAGTTGTGGCCTGCAAAGTTGCTCTGTTATCCCGTAGCAGCAGCTGCCTATATCTCGAATGGTTGGCGGCCTTTTAGTCTTGAGAATGATTTAAAAGTTGGAGATGTTTGTGTCTTTGAGCTCATTAATGGAGAAAATCCAGTGCTTGATGCTCATATTTATAGAGCCAATGGTTAA 627 0.327 MSITSRMGLFYQGKGIAVVALGGNNFDDSGGNIHGPRDSGNQWKIKSRSKTEQSLLRSISATRSSRAPLSLSRLRPPSLPCLVTTMASTGTATVSINGSSGDGNNDDDRTPSFLFSVARFPLSPWKNFKASFYTKYFENKEQNVEIQYKGKLWPAKLLCYPVAAAAYISNGWRPFSLENDLKVGDVCVFELINGENPVLDAHIYRANG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03711 208 CDD B3_DNA 150 205 IPR003340 GO:0003677
Aip10g03711 208 PANTHER B3 DOMAIN-CONTAINING 109 206 - -
Aip10g03711 208 Pfam B3 DNA binding domain 131 205 IPR003340 GO:0003677
Aip10g03711 208 ProSiteProfiles B3 DNA-binding domain profile. 149 207 IPR003340 GO:0003677
Aip10g03711 208 SMART B3_2 115 207 IPR003340 GO:0003677
Aip10g03711 208 SUPERFAMILY DNA-binding pseudobarrel domain 107 207 IPR015300 -
Aip10g03711 208 Gene3D - 102 207 IPR015300 -
Aip10g03711 208 MobiDBLite consensus disorder prediction 28 48 - -
Aip10g03711 208 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 109 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03711 Aip-Chr10 135014951 135016277 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03711 132 207 B3 DNA Binding Superfamily AT3G18990 39.474 2.69e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03711 B3 1.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03711 - - adu:107471956 170.629