Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03706 ATGAAGCTAGTGAAAAGTAATCTACAGAGATCAAGGGCCAATTTTAAAGCTTCCTTCTACATAAAGTATTTTGAAAACAAGGAGCAGAATGTAGAGATACGGTACCAAGGCAAGTTGGGGCCTGCAAAGTTGCTCTGTTATCCCGCAGCAGCAGCTGCCTATGTCTCGAATGGTTGGCGGCCTTTTAGTCTTGAGAATGGTTTAAAAGTTGGAGATGTTTGTGTCTTTGAGCTCATTAATGGAGAAAATCCAGTGCTTGATGCTCATATTTATAGAGCCGGTGGTTAA 288 0.4167 MKLVKSNLQRSRANFKASFYIKYFENKEQNVEIRYQGKLGPAKLLCYPAAAAAYVSNGWRPFSLENGLKVGDVCVFELINGENPVLDAHIYRAGG 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03706 95 CDD B3_DNA 54 92 IPR003340 GO:0003677
Aip10g03706 95 Pfam B3 DNA binding domain 9 90 IPR003340 GO:0003677
Aip10g03706 95 Gene3D - 1 94 IPR015300 -
Aip10g03706 95 ProSiteProfiles B3 DNA-binding domain profile. 1 94 IPR003340 GO:0003677
Aip10g03706 95 SUPERFAMILY DNA-binding pseudobarrel domain 3 94 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03706 Aip-Chr10 134999507 134999890 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03706 17 92 B3 DNA Binding Superfamily AT3G18990 35.526 8.10e-08 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03706 B3 1.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03706 - - adu:107471956 177.563