Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03684 ATGGCTTCCTCTAGTTTCCAAAGAAACAAGCATTCTCCTTCCTCTGCCGGTTTCTTCAAGATTGTTCTCAGACAAAACCTTGAAGATGGAAACATTGAGGTACCAAAAACGTTCAGTATGAAATATGGTGACAGTGTTCCAAATCCAGTGTATCTGAAGCCTCGAGATGGCACTGCATGGAAGATAGATTGGTCTGAGTATGATGGTGCGATTCTATTTGAAAATGGTTGGAAAGAATTTGCTTCATATTACTCTTTGGATCATGGCCATTTGCTGTGGTTTGAGTACAATCAAACTTCTAACATTGAAGTACACATTTTTGACAAGACTTGCCTTGAAATAGACTATCCTTCCATGGATCACATCAGCGATGATGATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTCCTTCTACAAGTAAAATGTTCACAAGTTCTGCCACAACTGAAGTAGACCACATTGATGATGACAACATGGCTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGAAAAACAGAGAAAGCAGCACCAAAGACACCATCTCCTTCTACAAGTAAAATGTTCACAAGTTCACCAAGAGGCCGAGGCCGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCAAAACTAAAGAAGTGAAATGGTGCCCTGAAATACACTATCCTTCCAAGGATCACATTGATGATGACAACATGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCAAGGAAAACAGAGAAAGCAGCATCAAACACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCATGACTAGAGTAGTGAAATGGTGCCCTGAAATAGACTATCCTTCACGAAGAGGCCGAGGCCGACCGAGAAAAACAGAGAAAGCAGCACCAAAGACACCATCTTCTTGTACAAGTACAATGTTCACAAGTTCTGCCAAAGCTAGAGGAGTGAAATGGTGGCGTGAAAAAGACTATCCTTGCAAGGACCACATTAATGATGACAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGAAAAACAGGGAAAGCAGCACTAAAGACACCATCTGCTTGTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGACCACATTGATGATCACAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAAAATTGAAAGCAGCAGCAGAAGTATCATCTCCTTCTACAAGTAAAATATTGATGAGTTCTGTCAAAACTGGAGATGTAGAGAAGGCCCCTGATAAACAAAACTGGATGCAGTGTTGCAAGAATGAAGCTAGTCAATCTGAATGA 1482 0.4426 MASSSFQRNKHSPSSAGFFKIVLRQNLEDGNIEVPKTFSMKYGDSVPNPVYLKPRDGTAWKIDWSEYDGAILFENGWKEFASYYSLDHGHLLWFEYNQTSNIEVHIFDKTCLEIDYPSMDHISDDDSIEILNELPPRGWPRKTEKAAPKTPSPSTSKMFTSSATTEVDHIDDDNMAKVENEPPRRGRGRPRKTEKAAPKTPSPSTSKMFTSSPRGRGRPRKTEKAAPKTPSPCTSKMFTSSAKTKEVKWCPEIHYPSKDHIDDDNMVENEPPRRGRGRPRKTEKAASNTPSPCTSKMFTSSAMTRVVKWCPEIDYPSRRGRGRPRKTEKAAPKTPSSCTSTMFTSSAKARGVKWWREKDYPCKDHINDDNMVKVENEPPRRGRGRPRKTGKAALKTPSACTSKMFTSSAKTRCPEIDYPSKDHIDDHNMVKVENEPPRRGRGRPRKKLKAAAEVSSPSTSKILMSSVKTGDVEKAPDKQNWMQCCKNEASQSE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03684 493 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 202 - -
Aip10g03684 493 MobiDBLite consensus disorder prediction 365 383 - -
Aip10g03684 493 MobiDBLite consensus disorder prediction 365 479 - -
Aip10g03684 493 SUPERFAMILY DNA-binding pseudobarrel domain 13 110 IPR015300 -
Aip10g03684 493 MobiDBLite consensus disorder prediction 395 409 - -
Aip10g03684 493 MobiDBLite consensus disorder prediction 198 212 - -
Aip10g03684 493 Gene3D - 10 111 IPR015300 -
Aip10g03684 493 CDD B3_DNA 18 108 IPR003340 GO:0003677
Aip10g03684 493 MobiDBLite consensus disorder prediction 166 196 - -
Aip10g03684 493 Pfam B3 DNA binding domain 19 109 IPR003340 GO:0003677
Aip10g03684 493 SMART AT_hook_2 438 450 IPR017956 GO:0003677
Aip10g03684 493 SMART AT_hook_2 380 392 IPR017956 GO:0003677
Aip10g03684 493 SMART AT_hook_2 318 330 IPR017956 GO:0003677
Aip10g03684 493 SMART AT_hook_2 273 285 IPR017956 GO:0003677
Aip10g03684 493 SMART AT_hook_2 213 225 IPR017956 GO:0003677
Aip10g03684 493 SMART AT_hook_2 184 196 IPR017956 GO:0003677
Aip10g03684 493 MobiDBLite consensus disorder prediction 247 283 - -
Aip10g03684 493 SMART B3_2 18 110 IPR003340 GO:0003677
Aip10g03684 493 PANTHER B3 DOMAIN-CONTAINING 9 202 - -
Aip10g03684 493 MobiDBLite consensus disorder prediction 314 344 - -
Aip10g03684 493 MobiDBLite consensus disorder prediction 148 165 - -
Aip10g03684 493 MobiDBLite consensus disorder prediction 284 298 - -
Aip10g03684 493 MobiDBLite consensus disorder prediction 415 440 - -
Aip10g03684 493 MobiDBLite consensus disorder prediction 131 298 - -
Aip10g03684 493 MobiDBLite consensus disorder prediction 228 242 - -
Aip10g03684 493 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Aip10g03684 493 PRINTS AT-hook-like domain signature 184 194 IPR017956 GO:0003677
Aip10g03684 493 PRINTS AT-hook-like domain signature 271 282 IPR017956 GO:0003677
Aip10g03684 493 PRINTS AT-hook-like domain signature 316 326 IPR017956 GO:0003677
Aip10g03684 493 PRINTS High mobility group protein (HMGY) signature 316 328 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Aip10g03684 493 PRINTS High mobility group protein (HMGY) signature 369 388 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03684 Aip-Chr10 134885474 134887740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03684 18 224 B3 DNA Binding Superfamily AT3G18990 25.877 2.58e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03684 B3 5.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03684 - - ahf:112783425 977.237