Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03682 ATGCCAAATCCAGTGAAACTCCAGCCTCCAGATGGCACTGAATGGAGAATAGATTGGACTAATCGTGATGGTGAGATTTTGTTTGAAAATGGTTGGAAAGAGTTTGCTACATTTTACACTTTGGAGAATGGTCATGTGTTGTGGTTTGAGTACAATGGAACTTCTAACATCAAAATAAACATATTCGACATGAGTGCCCTCGAAATTGATTATCCTTCCAATGGCCGAATCCGTGATGACAACTCGGTTGAGATTTTGGATGAACCGCCGCCACGAAGGGGCCGAGGCCGGCCGAAGAAAAAAGTGATAGCAGAACCAAAGCAATCACGTGCTTCTACAACTACAAGCAAAATAATGAAAAGTGCCATCAAAACTAAAGATATAGATAAAAATCCCAATACACAAAACTTGAAGCTGCATGTCGAGAATGAAAAAGATGGTCAATCTGAAGAGACAGGAGATCTTAAGCTGCCAATAATTCAACGTGCCAGACCAGATATGGATGTTATTAGAGAAGCAAAGAAGTTCAAGTCGAAAAATCCCTCTTTTGTCATAAAGATTAAGCAAATGCACCAAACAGGATCACCAGCAAATCTTCCAGTTTGTTTCTTCAGAATGTACTTCGAGAACACCAAGGAGTATGCAACTCTACGAGTTGGAAAGAAGCAGTGGCATGCAACATTGATCTATTATCCAAATAGGAAGAATGCCCTTATCTCTAATTGGCGCTTGTTCGTTGAAGAAAATAACTTAAAAGCCGGAGATGTTTGTATCTTTGAGCTCATTAACAGACAAGGTCCAGATCTTAAGGTTCATATTCGTCGAAGCCATGATTAG 837 0.4002 MPNPVKLQPPDGTEWRIDWTNRDGEILFENGWKEFATFYTLENGHVLWFEYNGTSNIKINIFDMSALEIDYPSNGRIRDDNSVEILDEPPPRRGRGRPKKKVIAEPKQSRASTTTSKIMKSAIKTKDIDKNPNTQNLKLHVENEKDGQSEETGDLKLPIIQRARPDMDVIREAKKFKSKNPSFVIKIKQMHQTGSPANLPVCFFRMYFENTKEYATLRVGKKQWHATLIYYPNRKNALISNWRLFVEENNLKAGDVCIFELINRQGPDLKVHIRRSHD 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03682 278 Gene3D - 1 66 IPR015300 -
Aip10g03682 278 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Aip10g03682 278 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 276 - -
Aip10g03682 278 SUPERFAMILY DNA-binding pseudobarrel domain 176 276 IPR015300 -
Aip10g03682 278 Gene3D - 164 278 IPR015300 -
Aip10g03682 278 MobiDBLite consensus disorder prediction 78 94 - -
Aip10g03682 278 ProSiteProfiles B3 DNA-binding domain profile. 222 277 IPR003340 GO:0003677
Aip10g03682 278 CDD B3_DNA 176 275 IPR003340 GO:0003677
Aip10g03682 278 SMART B3_2 183 277 IPR003340 GO:0003677
Aip10g03682 278 Pfam B3 DNA binding domain 199 276 IPR003340 GO:0003677
Aip10g03682 278 Pfam B3 DNA binding domain 5 63 IPR003340 GO:0003677
Aip10g03682 278 MobiDBLite consensus disorder prediction 78 117 - -
Aip10g03682 278 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Aip10g03682 278 PANTHER B3 DOMAIN-CONTAINING 2 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03682 Aip-Chr10 134856841 134857884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03682 5 278 B3 DNA Binding Superfamily AT3G18990 28.105 1.82e-24 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03682 B3 1.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03682 - - aip:107621185 542.732