Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03680 ATGCCAAACAAGTTCTGTAGGAAATATGGTGGTGATATGCCAAATCCAGTGCAACTCCAGCCTCCAGATGGCACTGAATGGAGAATAGATTGGACTAATCGTGATGGTGAGATTTTGTTTAAAAATGGTTGGAAAGAGTTTGCCTCATTTTACACTTTGGAGAATGGTCATGTGTTGTGGTTTGAGTACAATGGAACTTCTAACATCAAAGTTAACATATTCGACATGAGTGCCCTCGAAATTGATTATCCTTCCAATGGCCGAATCGGTGATGACAACTCGGTTGAGATTTTGGATGAACCGCCGCCACGAAGGGGCCGAGGCCGGCCGAAGAAAAAAGTGATAGCAGAACCAAAGCAATCACGTGCTTCTACTTCTACAAGCAAAATAATGAAAAGTGCCATCAAAACTAAAGATAAAGATAAAAATCCCAATACACAAAAATTGAAGCAGCATGTCGAGAATGAAAAAGATGGTCAATCTGAAGAGACAGCAGATCTTAAGCTGCCAATAATTCAACGTGCCAGACCAGATATGGATGAAGTTATTAGAGAAGCAAAGAAGTTCAAGTCGAAAAATCCTTCTTTTGTCATAAAGATTAAGCAAATGCACCAAACAGGATCACCAGCAAATCTTCCAGTTTGTTTCTTCAGAATGTACTTCGAGAACACGAAGCAGTATGCAATTCTACGAGTTGGAAAGAAGCAGTGGCATGCAACATTGATCTATTATCCAAATAGGAAGAATGCCCTTATCTCTAATTGGCGCTTGTTCCTTGAAGAAAATAACTTGAAAGCCGGAGATGTTTGTATCTTTGAGCTCATTAACAGACAAGGTCCAGATTTTAAGGTTCATATTCGTCGAAGCCATGATTAG 876 0.3984 MPNKFCRKYGGDMPNPVQLQPPDGTEWRIDWTNRDGEILFKNGWKEFASFYTLENGHVLWFEYNGTSNIKVNIFDMSALEIDYPSNGRIGDDNSVEILDEPPPRRGRGRPKKKVIAEPKQSRASTSTSKIMKSAIKTKDKDKNPNTQKLKQHVENEKDGQSEETADLKLPIIQRARPDMDEVIREAKKFKSKNPSFVIKIKQMHQTGSPANLPVCFFRMYFENTKQYAILRVGKKQWHATLIYYPNRKNALISNWRLFLEENNLKAGDVCIFELINRQGPDFKVHIRRSHD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03680 291 Gene3D - 176 291 IPR015300 -
Aip10g03680 291 MobiDBLite consensus disorder prediction 90 164 - -
Aip10g03680 291 ProSiteProfiles B3 DNA-binding domain profile. 1 77 IPR003340 GO:0003677
Aip10g03680 291 SMART B3_2 2 77 IPR003340 GO:0003677
Aip10g03680 291 SMART B3_2 196 290 IPR003340 GO:0003677
Aip10g03680 291 Gene3D - 1 78 IPR015300 -
Aip10g03680 291 CDD B3_DNA 189 288 IPR003340 GO:0003677
Aip10g03680 291 CDD B3_DNA 1 75 IPR003340 GO:0003677
Aip10g03680 291 PANTHER B3 DOMAIN-CONTAINING 1 289 - -
Aip10g03680 291 ProSiteProfiles B3 DNA-binding domain profile. 235 290 IPR003340 GO:0003677
Aip10g03680 291 SUPERFAMILY DNA-binding pseudobarrel domain 189 289 IPR015300 -
Aip10g03680 291 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 289 - -
Aip10g03680 291 SUPERFAMILY DNA-binding pseudobarrel domain 1 84 IPR015300 -
Aip10g03680 291 Pfam B3 DNA binding domain 212 289 IPR003340 GO:0003677
Aip10g03680 291 Pfam B3 DNA binding domain 2 75 IPR003340 GO:0003677
Aip10g03680 291 MobiDBLite consensus disorder prediction 133 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03680 Aip-Chr10 134830367 134831449 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03680 1 291 B3 DNA Binding Superfamily AT3G18990 27.385 1.89e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03680 B3 2.3e-10 CL0405