Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03677 ATGACATCCAAACCAGTCCTTTTCTTCAAGATTATAATCTCACAATCTCTTCAACAAGGGATACTTAAACTCCCAAAGAATTTCAGTAGAAAATATGGTGCTTCTTTACCAAAGCCTGTGTTTCTCAAGCCTCCAAATGGAACTGAATGGAAAGTAGATTGGACTATGCATGATGCTGATGTTGTGTTTGAAAATGGTTGGAAAGAGTTTGTTAAATATTACTCTATAAATCATGGGTATGTGTTGAAGTTTGAATATAATGGAAATTCCAAATTGGGGGTTCAAATTTGTGACAAGAGTGGCCTTGAAATAGAGTATCCTGTCAATGTTAATCAACAAGAAAAGGTTAACATTATTGAGATCAGTGATGAAGAAGTTCAAGCGTTCGATGAAATGCCTCAACGACAAAACAATAGAAGGAAATCACCAAAGTCTCAGCTTAACCAAAGGAATGGTAATCAGTCTCAAGGGACAAGTTTTTTGAAGTCAACATCAACATCCATTGAAAAAGAATTAGATGGTGATAGAAAGGAAACTCAAACAACTTCAAAGGTTAAAAGTCCCCTCGCTGAAACAAGTGGTACTCTGAAGGAAGCTGAGAAATTCACCTCAAAAAATCCGTTTTTCATCATAAATGTAACGAAAAAATTTCTGGACCAAAGCAGACCGAATGTACCAATTGACTTTGTCAAAAAGTACCTGAAGCAAAAGCAGTTTGCCATGGTAAGGTTTAGAGATAAATTGTGGCCTTTGAAGTTGCTGCCTTATGTAACAAAAAAGGAATCAATCCGGTTGTCCACCGGGTGGAACTTGTTTGCTAAAGCAAGTGAATTGCAAGCTGGAGATGTTTGCATCTTTGAGCTGATCAACATGAAAAATTCAGAGTTTGATGTTCACTTCTTTAGATTGTCCATACTTCATTACAACATTGGTGAGCCTGAAAAGCTTAGGAAAATGACTGAGGAAGATCAAGCCACACCACCACCCATGAATAATTCCAATGCAGTCCTTTTCTTCAAGATCATACTTTCAACAGCTCTTGAGGATGGAAAACTTAAGATCCCAAACAGTTTCACTAAAAAATATGGTGATGGCCTTTCAAACCCAGTGTTTCTTAAGCCTCCGGATGGAACCGAATGGAAAGTAGAATGGACTAAGCAAGATGATGGGATTTTTCTTGAACATGGTTGGAATGAGTTTGCTATGTATTACTCTCTAGATCATGGGCATTTGCTGTTTTTTGAGTACAAAAACACTTCTCAATTTGAGGTACAAATATGTGAAGTGAGTGGCCTTGAAATAGATTATCCTTTCCATGTCATTCAACAAGAAAATGAAAACATTGAACAGATCAATCATGAGGCAGATCAAGTGTTCGATGATATGCCTCAAAGCCAAAACAATAGAATGAAATCACCAATGTCTTATCCTCAACCATCAAACACAACTAGAGAAGTTAGAACAAGCTGCAGTTTGCAAAACTTGCCTCTTATTCACCAAATTAATGGTAATGAGTGTCAAGGAACAAGCTTTGACGAGTCAACATTTGCATCTATTAAGAAAGAATTGGATGAGGATATAGGTGGTAGCACTCCATGTCCAAGAGTGGAACGGTTAAAGCAAACCTTAAACAAAGCTACAACTTCCAAATCTAGACAAAACCCCTCTTTCATGGTTATCATGAAACCTTCCTATGCTAAAAGTTACTCGATGAATATCCCTTCAAAATTCACAGCAAAATATTTGAAGAAGCAAGCGACAGCCATCCTTGAGGTCCATGATGGGGGGAGAACATGGGCTGTTACTTACAGTTTTGGCAAATTCAGTTCTGGATGGAAGAGATTTGCAAAAGACAATAGTTTGAATGTAGGGGACATTTGTGTTTTTGAGCTCACCAATCCCAAAGACCTTTATTTTAAGGTATCCATAACTCGAATTGAAGAAGAGGAACTTCCGCTATCACAAGTTGAAGGAGACAGAGTCAATTGTTTAGAACCAGCAAAAGTCAATTATGTTGAAAGCAAAAGTGACATTATGATTAAAGTCAAAAAGGAAACACAAGAAACTTCATTGGCGACTCCTCCCGGCTTTGAGCCAAATGAAGAAGCCCTGAAAGAAGCTAAGAAATTCACCTCAGAAAATCCATTTTTCATGGTCATTATAAAGCCGAGCTTTCTGAGGCAACGCAGACCGAGTATACCAGCTTTCTTCATCAGAAATCACCTCAAAAAGACTCATATTGTGACATTCAAGTTTGGAGAGACACGGTGGCGTATAAAGTTGCTGCGTTACACAAGATACAGAAGTCCAATCACATTATCGAATGGTTGGAGCCTATTTTGTAGAGGAAGTAGATTGAAAGCAGGAGATGTTTGCATCTTTGAGCTAATCAACAAAGAAGATGCAGTGTTTGATGTTCACTTGTTTAGGTGCCACTCCTAG 2442 0.3796 MTSKPVLFFKIIISQSLQQGILKLPKNFSRKYGASLPKPVFLKPPNGTEWKVDWTMHDADVVFENGWKEFVKYYSINHGYVLKFEYNGNSKLGVQICDKSGLEIEYPVNVNQQEKVNIIEISDEEVQAFDEMPQRQNNRRKSPKSQLNQRNGNQSQGTSFLKSTSTSIEKELDGDRKETQTTSKVKSPLAETSGTLKEAEKFTSKNPFFIINVTKKFLDQSRPNVPIDFVKKYLKQKQFAMVRFRDKLWPLKLLPYVTKKESIRLSTGWNLFAKASELQAGDVCIFELINMKNSEFDVHFFRLSILHYNIGEPEKLRKMTEEDQATPPPMNNSNAVLFFKIILSTALEDGKLKIPNSFTKKYGDGLSNPVFLKPPDGTEWKVEWTKQDDGIFLEHGWNEFAMYYSLDHGHLLFFEYKNTSQFEVQICEVSGLEIDYPFHVIQQENENIEQINHEADQVFDDMPQSQNNRMKSPMSYPQPSNTTREVRTSCSLQNLPLIHQINGNECQGTSFDESTFASIKKELDEDIGGSTPCPRVERLKQTLNKATTSKSRQNPSFMVIMKPSYAKSYSMNIPSKFTAKYLKKQATAILEVHDGGRTWAVTYSFGKFSSGWKRFAKDNSLNVGDICVFELTNPKDLYFKVSITRIEEEELPLSQVEGDRVNCLEPAKVNYVESKSDIMIKVKKETQETSLATPPGFEPNEEALKEAKKFTSENPFFMVIIKPSFLRQRRPSIPAFFIRNHLKKTHIVTFKFGETRWRIKLLRYTRYRSPITLSNGWSLFCRGSRLKAGDVCIFELINKEDAVFDVHLFRCHS 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03677 813 SUPERFAMILY DNA-binding pseudobarrel domain 202 303 IPR015300 -
Aip10g03677 813 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 683 811 - -
Aip10g03677 813 MobiDBLite consensus disorder prediction 129 190 - -
Aip10g03677 813 ProSiteProfiles B3 DNA-binding domain profile. 556 647 IPR003340 GO:0003677
Aip10g03677 813 MobiDBLite consensus disorder prediction 139 167 - -
Aip10g03677 813 MobiDBLite consensus disorder prediction 168 182 - -
Aip10g03677 813 SMART B3_2 338 430 IPR003340 GO:0003677
Aip10g03677 813 SMART B3_2 8 100 IPR003340 GO:0003677
Aip10g03677 813 SMART B3_2 208 304 IPR003340 GO:0003677
Aip10g03677 813 SMART B3_2 716 812 IPR003340 GO:0003677
Aip10g03677 813 SMART B3_2 557 647 IPR003340 GO:0003677
Aip10g03677 813 Coils Coil 441 461 - -
Aip10g03677 813 SUPERFAMILY DNA-binding pseudobarrel domain 552 650 IPR015300 -
Aip10g03677 813 SUPERFAMILY DNA-binding pseudobarrel domain 710 811 IPR015300 -
Aip10g03677 813 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 329 645 - -
Aip10g03677 813 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 303 - -
Aip10g03677 813 ProSiteProfiles B3 DNA-binding domain profile. 337 430 IPR003340 GO:0003677
Aip10g03677 813 CDD B3_DNA 555 645 IPR003340 GO:0003677
Aip10g03677 813 CDD B3_DNA 7 98 IPR003340 GO:0003677
Aip10g03677 813 SUPERFAMILY DNA-binding pseudobarrel domain 332 429 IPR015300 -
Aip10g03677 813 Gene3D - 330 431 IPR015300 -
Aip10g03677 813 Gene3D - 2 101 IPR015300 -
Aip10g03677 813 SUPERFAMILY DNA-binding pseudobarrel domain 3 101 IPR015300 -
Aip10g03677 813 Pfam B3 DNA binding domain 557 643 IPR003340 GO:0003677
Aip10g03677 813 Pfam B3 DNA binding domain 208 302 IPR003340 GO:0003677
Aip10g03677 813 Pfam B3 DNA binding domain 339 428 IPR003340 GO:0003677
Aip10g03677 813 Pfam B3 DNA binding domain 716 810 IPR003340 GO:0003677
Aip10g03677 813 Pfam B3 DNA binding domain 8 99 IPR003340 GO:0003677
Aip10g03677 813 PANTHER B3 DOMAIN-CONTAINING 683 811 - -
Aip10g03677 813 CDD B3_DNA 207 302 IPR003340 GO:0003677
Aip10g03677 813 CDD B3_DNA 337 427 IPR003340 GO:0003677
Aip10g03677 813 CDD B3_DNA 715 810 IPR003340 GO:0003677
Aip10g03677 813 ProSiteProfiles B3 DNA-binding domain profile. 716 812 IPR003340 GO:0003677
Aip10g03677 813 PANTHER B3 DOMAIN-CONTAINING 2 303 - -
Aip10g03677 813 PANTHER B3 DOMAIN-CONTAINING 329 645 - -
Aip10g03677 813 ProSiteProfiles B3 DNA-binding domain profile. 208 304 IPR003340 GO:0003677
Aip10g03677 813 Gene3D - 536 648 IPR015300 -
Aip10g03677 813 Gene3D - 190 304 IPR015300 -
Aip10g03677 813 Gene3D - 698 812 IPR015300 -
Aip10g03677 813 ProSiteProfiles B3 DNA-binding domain profile. 7 100 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03677 Aip-Chr10 134802776 134809421 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03677 698 812 B3 DNA Binding Superfamily AT3G18990 34.188 2.44e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03677 B3 5.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03677 - - adu:107471690 991.49