Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03673 ATGGCTTTTAATCAACAAGGAGAATCCACTAATAGTGTTGTTAGTTTCTTCAAGATCATTTGTCGTTGGCATATTCGAGATGAGAAGATTAAGCTTCCAACGGAATTCACAAACAAATATGGATTGAAACTCCCAAATCCGGTGATTCTGAAAGTTGTAAATGGCAACCAAAAGAAAGTGCATTGGACCAATATTAATGGTTCCATTTGGTTTATTGGGAAGGAATGGAAAGAGTTTCTTGAGCACTACTCTGTCTCCCATGGTCACCTTTTGTTGTTCAAATATTGTCTTGATGCTTCATATTTTAGGGTTCAAATATTTGACAACACTACTCTTGAAATTGATTACCCTTCTCCTGAACTCAATTATGCTGATTATGATGATGATGATTTTGATTTTGATGATGATGGTGATGGTGATGGTGATGATGATGTTATGAAGGTTCACTATGATCAATATCAATTCAAAGAGAAAAATAAGGGTATTGCTGATGCTATAAAGAGTAGAGACAGACAAGAGAGACAAGATGGCAATCCCAATTTTGAGGTTGTCATGAGGGATTCATATATTAATGGAGGAAGATGCATGGCCATACCATCTAATTTTGCAAGGAAGTACATGAAGGAAGGAGGGTACCTACTAAGAGTGGAAGATGGGAGGGCATGGAAAGTGATGTTTAAGACTTGGAGTGGAGATGGAGTGCCTTACAAGAAATACAAATTGCAAAAGGGTTGGGCCAAATTTAGCCAAGGAAACAAGTTACAAAAGGATGATGTTTGTGTCTTTGAGCTTCTTTACAACCACAATTCTAATGGTAGCTCCACTACCATACCAACCTTCAATGTTCTAATTCACCGGAACCACATTGGTAGCAGCTATTCACCATGA 888 0.3773 MAFNQQGESTNSVVSFFKIICRWHIRDEKIKLPTEFTNKYGLKLPNPVILKVVNGNQKKVHWTNINGSIWFIGKEWKEFLEHYSVSHGHLLLFKYCLDASYFRVQIFDNTTLEIDYPSPELNYADYDDDDFDFDDDGDGDGDDDVMKVHYDQYQFKEKNKGIADAIKSRDRQERQDGNPNFEVVMRDSYINGGRCMAIPSNFARKYMKEGGYLLRVEDGRAWKVMFKTWSGDGVPYKKYKLQKGWAKFSQGNKLQKDDVCVFELLYNHNSNGSSTTIPTFNVLIHRNHIGSSYSP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03673 295 PANTHER B3 DOMAIN-CONTAINING 9 159 - -
Aip10g03673 295 PANTHER B3 DOMAIN-CONTAINING 155 286 - -
Aip10g03673 295 ProSiteProfiles B3 DNA-binding domain profile. 15 110 IPR003340 GO:0003677
Aip10g03673 295 Gene3D - 9 111 IPR015300 -
Aip10g03673 295 ProSiteProfiles B3 DNA-binding domain profile. 181 288 IPR003340 GO:0003677
Aip10g03673 295 SMART B3_2 181 273 IPR003340 GO:0003677
Aip10g03673 295 SMART B3_2 16 110 IPR003340 GO:0003677
Aip10g03673 295 CDD B3_DNA 15 108 IPR003340 GO:0003677
Aip10g03673 295 CDD B3_DNA 179 264 IPR003340 GO:0003677
Aip10g03673 295 Gene3D - 156 291 IPR015300 -
Aip10g03673 295 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 155 286 - -
Aip10g03673 295 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 159 - -
Aip10g03673 295 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Aip10g03673 295 Pfam B3 DNA binding domain 181 266 IPR003340 GO:0003677
Aip10g03673 295 SUPERFAMILY DNA-binding pseudobarrel domain 175 268 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03673 Aip-Chr10 134779503 134781810 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03673 4 129 B3 DNA Binding Superfamily AT4G01580 33.333 5.40e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03673 B3 1.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03673 - - ahf:112784208 590.112