Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03668 ATGTCTATGCATTCATCGTCACCAGGTTTCTTTAAGATACTTGTACACAACAAGTTCAAAAAAGAATTGATGATTCCCAAGAGTTTTGTGAGAAAATATTGGGAAGGGATATCAAATCCTATAATACTAAAGCTACCAAATAATAGGGAAGAAGAAGTATATTGGAGTCAGAGGAAAAAAAATGAAATTTGGTTGCAAAATGGTTGGGATGAAGTTGTGAAATTATGTCACTTGGAATATGAATTTTTGTTAACATTTGAATACAAAGAAAGATCATGCTTTGAACTCAAAGTATATGATAAGAGTGCTTCACAAATAAACTACCATTCAGATTGTGGAGTTCATGAAAATAATCATGATTATATTGTTGTTGATGATCATGTTCAAAGGGAACCAAAGGCAAAGAAGAGAACCAACAAAGCAGGAATTAGAAAAAGCATGCTCAATAATGTTAGGGAGAAAATAGAGATGGCTGAAGCCTTATCTACAAAGCTGAAAAATCCTTCTTTTTTTCTTGTTCTGAAGCCTTCATATGTTCATGGCAATGCTAATCTGGTGCATATACCATCTTCATTTTCCAGACAATACTTAAATGGATTAAAAGGAAGTGGCACGATTTGGGTTAGTGACGATGAAGACTCGAATTGGTCCATTAATTACAATTTTTCTAATATTAGAAAACGAACTACAATCCATGGTGGTTGGAACAAATTTTGCAAGGAAAATAAGCTACAAGTTGGTGATGTTTGTGTCTTTGAAATGATGACTCAAGTCAACCCCCATTCCTTCAAAATTCACATCATTCCAGTCACACAACAACCACCACCAACTCCTCCTCATCAATTTCAAGCTGATCAACAAAAAGATAATGATAAAGTTATTAGAAAGAGAAAAAGAAACAATAGGGTTTCAGGAAGATCTCCACAGTGTCACGTGCTTCAGAAATCTGAAAGTCCCAATAGGCAGAGTTATAATAAATTCGAGCTTCGAATATCAAAATCTAAATTAAAGCAATTCACTTCATCAGTATTCGTACCCATACCAAAGAAATTTATTCGCAGGAATGAAATATGTCTTGGGAAAAATGTGACACTTAAATATGGACAAGAATCGTGGATTGTGAAAGTGGTGAATGGTGGATCGTTTAGCAAAGGTTGGATCCAGTTTGCAACAGAATGCAAATTAGTTGTTGGAGACATTTGTCGATTTAAACTGAGTGACCGTAAAAATTTAGTGTTCCATGTTTCCATTTTTAAGGAGCATCGCTCATGA 1272 0.3451 MSMHSSSPGFFKILVHNKFKKELMIPKSFVRKYWEGISNPIILKLPNNREEEVYWSQRKKNEIWLQNGWDEVVKLCHLEYEFLLTFEYKERSCFELKVYDKSASQINYHSDCGVHENNHDYIVVDDHVQREPKAKKRTNKAGIRKSMLNNVREKIEMAEALSTKLKNPSFFLVLKPSYVHGNANLVHIPSSFSRQYLNGLKGSGTIWVSDDEDSNWSINYNFSNIRKRTTIHGGWNKFCKENKLQVGDVCVFEMMTQVNPHSFKIHIIPVTQQPPPTPPHQFQADQQKDNDKVIRKRKRNNRVSGRSPQCHVLQKSESPNRQSYNKFELRISKSKLKQFTSSVFVPIPKKFIRRNEICLGKNVTLKYGQESWIVKVVNGGSFSKGWIQFATECKLVVGDICRFKLSDRKNLVFHVSIFKEHRS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03668 423 ProSiteProfiles B3 DNA-binding domain profile. 171 271 IPR003340 GO:0003677
Aip10g03668 423 SUPERFAMILY DNA-binding pseudobarrel domain 340 419 IPR015300 -
Aip10g03668 423 PANTHER B3 DOMAIN-CONTAINING 4 268 - -
Aip10g03668 423 PANTHER B3 DOMAIN-CONTAINING 284 420 - -
Aip10g03668 423 Pfam B3 DNA binding domain 344 419 IPR003340 GO:0003677
Aip10g03668 423 Pfam B3 DNA binding domain 10 99 IPR003340 GO:0003677
Aip10g03668 423 Pfam B3 DNA binding domain 170 268 IPR003340 GO:0003677
Aip10g03668 423 MobiDBLite consensus disorder prediction 305 321 - -
Aip10g03668 423 MobiDBLite consensus disorder prediction 270 321 - -
Aip10g03668 423 CDD B3_DNA 347 419 IPR003340 GO:0003677
Aip10g03668 423 Gene3D - 2 103 IPR015300 -
Aip10g03668 423 ProSiteProfiles B3 DNA-binding domain profile. 330 421 IPR003340 GO:0003677
Aip10g03668 423 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Aip10g03668 423 SUPERFAMILY DNA-binding pseudobarrel domain 3 102 IPR015300 -
Aip10g03668 423 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 268 - -
Aip10g03668 423 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 284 420 - -
Aip10g03668 423 Gene3D - 149 272 IPR015300 -
Aip10g03668 423 Gene3D - 309 421 IPR015300 -
Aip10g03668 423 CDD B3_DNA 168 268 IPR003340 GO:0003677
Aip10g03668 423 SMART B3_2 10 102 IPR003340 GO:0003677
Aip10g03668 423 SMART B3_2 170 271 IPR003340 GO:0003677
Aip10g03668 423 SMART B3_2 339 421 IPR003340 GO:0003677
Aip10g03668 423 CDD B3_DNA 8 100 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03668 Aip-Chr10 134751531 134754246 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03668 10 415 B3 DNA Binding Superfamily AT4G00260 25.059 6.21e-18 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03668 B3 4.2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03668 - - aip:110267705 852.818