Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03667 ATGGCCTTCTATAATAACATGTTTTTTAAGGTTCTTATTGATCCCAACCAACTGAGGAAAAACCAGCCAAAATGGAAGAAACCGTCATCACTTCATGAATTGGAGATACCACCAAGTTTTGTAGAGAAAAATTGGAAAGGATTGTCAAATCCTATATTATTGGAGCTACCAACTGGACATAGAATAGAAATAAAATGGATCATGAAGAAAAATAATAGTGTTTGGTTAAATGAAGGGTGGAGAAGAGTTGTGGAATTGTTAGGATTAAAACATGAATATTTTGTGACTTTTAAATATAATGGAAAATCGAAATTTGAACTCATAGTGTTTCATCCGAATACTTTAGAAATTGATTACTCAAATGTGAGAAATTTCTATAATGATGATCACCATCAAGGTGCAAATGAAAATCACGATGATGATGACTCTATTGAGATTATTGCTGAAGAGCCAGAACAATTCAATGATGATGATGATGATGATGATGATGACTCTATTGAGATTATTGCTGAAGAGCCAGAACAATTCAACAACAGAAGCAAAGAAGGAACTTGTAAAAGCATGCTCAAAGAAGTTCATGAAAATCATGACTATATTGTAATTGATGATGATGATGATGAAGAAAGGCACTCTAAACCACTCTTGATGAAAAAGAGAACCAAAACAGAAGGAACAAGTAAAAGCATGCTCAAAAAAGTGAGGAGAAATATGAAATGTGGTGATCACCGGAGGAAGGCACTGGAGAGGGCTGAAGCCATCTCTTCAAAGCTGAAAAATCCTTCTTTTGTTCGTGATTTGAGGCGTTCATATGTTGATTACGGGATCCTGCAAATACCAAGTTCATTTTCGGAACAATATTTATATAGATTAAAAGGAAGTGGCACAATTTGGGTTAGTGATAATGAAGACATGAAATGGAGCATCAAATACAGTTACAATGATTCTCAGAACAGAACAAGTATCTATGGTGAATGGCACAAATTTAGAGAAGAAAATGGGTTAGAAGTTGGTGATGTTTGTGTATTCGAAATGATGACGAAAGTTGAACCCCATTCCTTCAAAATTTACATCATCCGAGTCAGACAAGAATCATCATCATCTTATCCTCATCAATTCCAAGAGTCCGAAAGTCCCAATAGGCAGACGAATAATCAATTCGAGCTTCTGATAACAGAATCTAAATTGAAGACACCAACACGCGTGAGAATACCAAGGAGCTTTATTTGCAGGAATGAAAGATGTGTTGGGAAAGATGTGACATTTAAAGTTGGAAAAGAATCGTGGATTGTGAAAGTGTTGAATTCTGGTTCGTTTTGTAAAGGTTGGATTCAGTTCGCAAGAGAATGCAAATTAGTTGTTGGAGATATTTGTTATTTTGAACTCACTGACCCCACTAATTTTGTGTTCCATGTTTCCATTTCTAAGGAGGAGCATCGTTCATGA 1443 0.3541 MAFYNNMFFKVLIDPNQLRKNQPKWKKPSSLHELEIPPSFVEKNWKGLSNPILLELPTGHRIEIKWIMKKNNSVWLNEGWRRVVELLGLKHEYFVTFKYNGKSKFELIVFHPNTLEIDYSNVRNFYNDDHHQGANENHDDDDSIEIIAEEPEQFNDDDDDDDDDSIEIIAEEPEQFNNRSKEGTCKSMLKEVHENHDYIVIDDDDDEERHSKPLLMKKRTKTEGTSKSMLKKVRRNMKCGDHRRKALERAEAISSKLKNPSFVRDLRRSYVDYGILQIPSSFSEQYLYRLKGSGTIWVSDNEDMKWSIKYSYNDSQNRTSIYGEWHKFREENGLEVGDVCVFEMMTKVEPHSFKIYIIRVRQESSSSYPHQFQESESPNRQTNNQFELLITESKLKTPTRVRIPRSFICRNERCVGKDVTFKVGKESWIVKVLNSGSFCKGWIQFARECKLVVGDICYFELTDPTNFVFHVSISKEEHRS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03667 480 SUPERFAMILY DNA-binding pseudobarrel domain 258 358 IPR015300 -
Aip10g03667 480 SMART B3_2 8 113 IPR003340 GO:0003677
Aip10g03667 480 SMART B3_2 262 361 IPR003340 GO:0003677
Aip10g03667 480 SMART B3_2 386 477 IPR003340 GO:0003677
Aip10g03667 480 CDD B3_DNA 7 110 IPR003340 GO:0003677
Aip10g03667 480 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 371 475 - -
Aip10g03667 480 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 360 - -
Aip10g03667 480 PANTHER B3 DOMAIN-CONTAINING 371 475 - -
Aip10g03667 480 PANTHER B3 DOMAIN-CONTAINING 8 360 - -
Aip10g03667 480 Pfam B3 DNA binding domain 269 359 IPR003340 GO:0003677
Aip10g03667 480 Pfam B3 DNA binding domain 30 109 IPR003340 GO:0003677
Aip10g03667 480 Pfam B3 DNA binding domain 390 474 IPR003340 GO:0003677
Aip10g03667 480 Gene3D - 3 114 IPR015300 -
Aip10g03667 480 ProSiteProfiles B3 DNA-binding domain profile. 386 477 IPR003340 GO:0003677
Aip10g03667 480 Gene3D - 369 478 IPR015300 -
Aip10g03667 480 Gene3D - 240 363 IPR015300 -
Aip10g03667 480 CDD B3_DNA 260 359 IPR003340 GO:0003677
Aip10g03667 480 SUPERFAMILY DNA-binding pseudobarrel domain 382 474 IPR015300 -
Aip10g03667 480 ProSiteProfiles B3 DNA-binding domain profile. 34 113 IPR003340 GO:0003677
Aip10g03667 480 CDD B3_DNA 386 475 IPR003340 GO:0003677
Aip10g03667 480 SUPERFAMILY DNA-binding pseudobarrel domain 28 120 IPR015300 -
Aip10g03667 480 ProSiteProfiles B3 DNA-binding domain profile. 261 361 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03667 Aip-Chr10 134747103 134750202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03667 34 345 B3 DNA Binding Superfamily AT3G18990 25.228 3.25e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03667 B3 2.6e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03667 - - aip:107621190 953.74